Figure 1.

(Left) Evolution of genomic tiling arrays. Representing large spans of genomic DNA with bacterial artificial chromosome (BAC) clones facilitates global experimentation using relatively few array features, at the expense of low-tiling resolution. Higher-resolution designs using PCR products or oligonucleotides allow precise mapping of transcripts and regulatory elements, but require labor-intensive or technologically sophisticated approaches to implement. (Upper right) Linear feature tiling with gapped and end-to-end oligonucleotide placement. (Lower right) Overlapping tiles using fractional offset (e.g., one 25-mer probe placed every 5 nt) and single-base offset placement. The latter strategy provides a finer-resolution tiling of the genomic sequence, and can give a more precise indication of where hybridizing sequences are located on the chromosome.

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