Table of Contents

June 2020; 30 (6)

Research

  • Characterization of colibactin-associated mutational signature in an Asian oral squamous cell carcinoma and in other mucosal tumor types

    • Arnoud Boot,
    • Alvin W.T. Ng,
    • Fui Teen Chong,
    • Szu-Chi Ho,
    • Willie Yu,
    • Daniel S.W. Tan,
    • N. Gopalakrishna Iyer,
    • and Steven G. Rozen
    Genome Res. June 2020 30: 803-813; Published in Advance July 6, 2020, doi:10.1101/gr.255620.119

  • Single-cell analysis of human embryos reveals diverse patterns of aneuploidy and mosaicism

    • Margaret R. Starostik,
    • Olukayode A. Sosina,
    • and Rajiv C. McCoy
    Genome Res. June 2020 30: 814-825; Published in Advance July 8, 2020, doi:10.1101/gr.262774.120
    OPEN ACCESS ARTICLE

  • Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability

    • Richard J. Wang,
    • Gregg W.C. Thomas,
    • Muthuswamy Raveendran,
    • R. Alan Harris,
    • Harshavardhan Doddapaneni,
    • Donna M. Muzny,
    • John P. Capitanio,
    • Predrag Radivojac,
    • Jeffrey Rogers,
    • and Matthew W. Hahn
    Genome Res. June 2020 30: 826-834; Published in Advance May 27, 2020, doi:10.1101/gr.255174.119

  • Coexpression enrichment analysis at the single-cell level reveals convergent defects in neural progenitor cells and their cell-type transitions in neurodevelopmental disorders

    • Kaifang Pang,
    • Li Wang,
    • Wei Wang,
    • Jian Zhou,
    • Chao Cheng,
    • Kihoon Han,
    • Huda Y. Zoghbi,
    • and Zhandong Liu
    Genome Res. June 2020 30: 835-848; Published in Advance June 18, 2020, doi:10.1101/gr.254987.119

  • Untangling the effects of cellular composition on coexpression analysis

    • Marjan Farahbod and
    • Paul Pavlidis
    Genome Res. June 2020 30: 849-859; Published in Advance June 24, 2020, doi:10.1101/gr.256735.119

  • Quantitative analysis of Y-Chromosome gene expression across 36 human tissues

    • Alexander K. Godfrey,
    • Sahin Naqvi,
    • Lukáš Chmátal,
    • Joel M. Chick,
    • Richard N. Mitchell,
    • Steven P. Gygi,
    • Helen Skaletsky,
    • and David C. Page
    Genome Res. June 2020 30: 860-873; Published in Advance May 27, 2020, doi:10.1101/gr.261248.120

  • The evolution of sex-biased gene expression in the Drosophila brain

    • Samuel Khodursky,
    • Nicolas Svetec,
    • Sylvia M. Durkin,
    • and Li Zhao
    Genome Res. June 2020 30: 874-884; Published in Advance June 18, 2020, doi:10.1101/gr.259069.119

Methods

  • A long-read RNA-seq approach to identify novel transcripts of very large genes

    • Prech Uapinyoying,
    • Jeremy Goecks,
    • Susan M. Knoblach,
    • Karuna Panchapakesan,
    • Carsten G. Bonnemann,
    • Terence A. Partridge,
    • Jyoti K. Jaiswal,
    • and Eric P. Hoffman
    Genome Res. June 2020 30: 885-897; Published in Advance July 6, 2020, doi:10.1101/gr.259903.119
    OPEN ACCESS ARTICLE

  • Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information

    • Zhoutao Chen,
    • Long Pham,
    • Tsai-Chin Wu,
    • Guoya Mo,
    • Yu Xia,
    • Peter L. Chang,
    • Devin Porter,
    • Tan Phan,
    • Huu Che,
    • Hao Tran,
    • Vikas Bansal,
    • Justin Shaffer,
    • Pedro Belda-Ferre,
    • Greg Humphrey,
    • Rob Knight,
    • Pavel Pevzner,
    • Son Pham,
    • Yong Wang,
    • and Ming Lei
    Genome Res. June 2020 30: 898-909; Published in Advance June 15, 2020, doi:10.1101/gr.260380.119

  • Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq

    • Robert A. Policastro,
    • R. Taylor Raborn,
    • Volker P. Brendel,
    • and Gabriel E. Zentner
    Genome Res. June 2020 30: 910-923; Published in Advance July 6, 2020, doi:10.1101/gr.261545.120

Resource

  • Dynamic transcriptional and chromatin accessibility landscape of medaka embryogenesis

    • Yingshu Li,
    • Yongjie Liu,
    • Hang Yang,
    • Ting Zhang,
    • Kiyoshi Naruse,
    • and Qiang Tu
    Genome Res. June 2020 30: 924-937; Published in Advance June 26, 2020, doi:10.1101/gr.258871.119
    OPEN ACCESS ARTICLE

Corrigenda

  • Corrigendum: Human auditory ossicles as an alternative optimal source of ancient DNA

    • Kendra Sirak,
    • Daniel Fernandes,
    • Olivia Cheronet,
    • Eadaoin Harney,
    • Matthew Mah,
    • Swapan Mallick,
    • Nadin Rohland,
    • Nicole Adamski,
    • Nasreen Broomandkhoshbacht,
    • Kimberly Callan,
    • Francesca Candilio,
    • Ann Marie Lawson,
    • Kirsten Mandl,
    • Jonas Oppenheimer,
    • Kristin Stewardson,
    • Fatma Zalzala,
    • Alexandra Anders,
    • Juraj Bartík,
    • Alfredo Coppa,
    • Tumen Dashtseveg,
    • Sándor Évinger,
    • Zdeněk Farkaš,
    • Tamás Hajdu,
    • Jamsranjav Bayarsaikhan,
    • Lauren McIntyre,
    • Vyacheslav Moiseyev,
    • Mercedes Okumura,
    • Ildikó Pap,
    • Michael Pietrusewsky,
    • Pál Raczky,
    • Alena Šefčáková,
    • Andrei Soficaru,
    • Tamás Szeniczey,
    • Béla Miklós Szőke,
    • Dennis Van Gerven,
    • Sergey Vasilyev,
    • Lynne Bell,
    • David Reich,
    • and Ron Pinhasi
    Genome Res. June 2020 30: 938_1; doi:10.1101/gr.266098.120
    OPEN ACCESS ARTICLE

  • Corrigendum: OMA standalone: orthology inference among public and custom genomes and transcriptomes

    • Adrian M. Altenhoff,
    • Jeremy Levy,
    • Magdalena Zarowiecki,
    • Bartłomiej Tomiczek,
    • Alex Warwick Vesztrocy,
    • Daniel A. Dalquen,
    • Steven Müller,
    • Maximilian J. Telford,
    • Natasha M. Glover,
    • David Dylus,
    • and Christophe Dessimoz
    Genome Res. June 2020 30: 938_2; doi:10.1101/gr.266809.120
    OPEN ACCESS ARTICLE
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This Issue

June 2020; 30 (6)
Cover
  1. Research
  2. Methods
  3. Resource
  4. Corrigenda

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