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Research

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  Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations

  • Phillippa C. Taberlay,
  • Joanna Achinger-Kawecka,
  • Aaron T.L. Lun,
  • Fabian A. Buske,
  • Kenneth Sabir,
  • Cathryn M. Gould,
  • Elena Zotenko,
  • Saul A. Bert,
  • Katherine A. Giles,
  • Denis C. Bauer,
  • Gordon K. Smyth,
  • Clare Stirzaker,
  • Sean I. O'Donoghue,
  • and Susan J. Clark

  Genome Res. June 2016 26: 719-731; Published in Advance April 6, 2016, doi:10.1101/gr.201517.115
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  Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks

  • Endre Sebestyén,
  • Babita Singh,
  • Belén Miñana,
  • Amadís Pagès,
  • Francesca Mateo,
  • Miguel Angel Pujana,
  • Juan Valcárcel,
  • and Eduardo Eyras

  Genome Res. June 2016 26: 732-744; Published in Advance April 13, 2016, doi:10.1101/gr.199935.115
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  A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer

  • Emma C. Scott,
  • Eugene J. Gardner,
  • Ashiq Masood,
  • Nelson T. Chuang,
  • Paula M. Vertino,
  • and Scott E. Devine

  Genome Res. June 2016 26: 745-755; Published in Advance May 10, 2016, doi:10.1101/gr.201814.115
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  Pervasive polymorphic imprinted methylation in the human placenta

  • Courtney W. Hanna,
  • Maria S. Peñaherrera,
  • Heba Saadeh,
  • Simon Andrews,
  • Deborah E. McFadden,
  • Gavin Kelsey,
  • and Wendy P. Robinson

  Genome Res. June 2016 26: 756-767; Published in Advance January 14, 2016, doi:10.1101/gr.196139.115
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  Impact of the X Chromosome and sex on regulatory variation

  • Kimberly R. Kukurba,
  • Princy Parsana,
  • Brunilda Balliu,
  • Kevin S. Smith,
  • Zachary Zappala,
  • David A. Knowles,
  • Marie-Julie Favé,
  • Joe R. Davis,
  • Xin Li,
  • Xiaowei Zhu,
  • James B. Potash,
  • Myrna M. Weissman,
  • Jianxin Shi,
  • Anshul Kundaje,
  • Douglas F. Levinson,
  • Philip Awadalla,
  • Sara Mostafavi,
  • Alexis Battle,
  • and Stephen B. Montgomery

  Genome Res. June 2016 26: 768-777; Published in Advance April 21, 2016, doi:10.1101/gr.197897.115
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  Interactions between pluripotency factors specify cis-regulation in embryonic stem cells

  • Chris Fiore and
  • Barak A. Cohen

  Genome Res. June 2016 26: 778-786; Published in Advance April 15, 2016, doi:10.1101/gr.200733.115
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  Evidence for the fixation of gene duplications by positive selection in Drosophila

  • Margarida Cardoso-Moreira,
  • J. Roman Arguello,
  • Srikanth Gottipati,
  • L.G. Harshman,
  • Jennifer K. Grenier,
  • and Andrew G. Clark

  Genome Res. June 2016 26: 787-798; Published in Advance April 12, 2016, doi:10.1101/gr.199323.115
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  Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast

  • Gregory T. Booth,
  • Isabel X. Wang,
  • Vivian G. Cheung,
  • and John T. Lis

  Genome Res. June 2016 26: 799-811; Published in Advance May 12, 2016, doi:10.1101/gr.204578.116
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  Venus flytrap carnivorous lifestyle builds on herbivore defense strategies

  • Felix Bemm,
  • Dirk Becker,
  • Christina Larisch,
  • Ines Kreuzer,
  • Maria Escalante-Perez,
  • Waltraud X. Schulze,
  • Markus Ankenbrand,
  • Anna-Lena Van de Weyer,
  • Elzbieta Krol,
  • Khaled A. Al-Rasheid,
  • Axel Mithöfer,
  • Andreas P. Weber,
  • Jörg Schultz,
  • and Rainer Hedrich

  Genome Res. June 2016 26: 812-825; Published in Advance May 4, 2016, doi:10.1101/gr.202200.115
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  Evolutionary assembly patterns of prokaryotic genomes

  • Maximilian O. Press,
  • Christine Queitsch,
  • and Elhanan Borenstein

  Genome Res. June 2016 26: 826-833; Published in Advance April 14, 2016, doi:10.1101/gr.200097.115
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