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  SORBS2 transcription is activated by telomere position effect–over long distance upon telomere shortening in muscle cells from patients with facioscapulohumeral dystrophy

  • Jérôme D. Robin,
  • Andrew T. Ludlow,
  • Kimberly Batten,
  • Marie-Cécile Gaillard,
  • Guido Stadler,
  • Frédérique Magdinier,
  • Woodring E. Wright,
  • and Jerry W. Shay

  Genome Res. December 2015 25: 1781-1790; Published in Advance September 10, 2015, doi:10.1101/gr.190660.115
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  Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites

  • Daniel Savic,
  • Brian S. Roberts,
  • Julia B. Carleton,
  • E. Christopher Partridge,
  • Michael A. White,
  • Barak A. Cohen,
  • Gregory M. Cooper,
  • Jason Gertz,
  • and Richard M. Myers

  Genome Res. December 2015 25: 1791-1800; Published in Advance October 20, 2015, doi:10.1101/gr.191593.115
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  Bacterial infection remodels the DNA methylation landscape of human dendritic cells

  • Alain Pacis,
  • Ludovic Tailleux,
  • Alexander M. Morin,
  • John Lambourne,
  • Julia L. MacIsaac,
  • Vania Yotova,
  • Anne Dumaine,
  • Anne Danckaert,
  • Francesca Luca,
  • Jean-Christophe Grenier,
  • Kasper D. Hansen,
  • Brigitte Gicquel,
  • Miao Yu,
  • Athma Pai,
  • Chuan He,
  • Jenny Tung,
  • Tomi Pastinen,
  • Michael S. Kobor,
  • Roger Pique-Regi,
  • Yoav Gilad,
  • and Luis B. Barreiro

  Genome Res. December 2015 25: 1801-1811; Published in Advance September 21, 2015, doi:10.1101/gr.192005.115
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  CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors

  • Kosuke Hashimoto,
  • Ana Maria Suzuki,
  • Alexandre Dos Santos,
  • Christophe Desterke,
  • Agnese Collino,
  • Serena Ghisletti,
  • Emilie Braun,
  • Alessandro Bonetti,
  • Alexandre Fort,
  • Xian-Yang Qin,
  • Enrico Radaelli,
  • Bogumil Kaczkowski,
  • Alistair R.R. Forrest,
  • Soichi Kojima,
  • Didier Samuel,
  • Gioacchino Natoli,
  • Marie Annick Buendia,
  • Jamila Faivre,
  • and Piero Carninci

  Genome Res. December 2015 25: 1812-1824; Published in Advance October 28, 2015, doi:10.1101/gr.191031.115
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  Prepatterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B

  • Torunn Rønningen,
  • Akshay Shah,
  • Anja R. Oldenburg,
  • Kristin Vekterud,
  • Erwan Delbarre,
  • Jan Øivind Moskaug,
  • and Philippe Collas

  Genome Res. December 2015 25: 1825-1835; Published in Advance September 10, 2015, doi:10.1101/gr.193748.115
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  Ribosome profiling reveals an important role for translational control in circadian gene expression

  • Christopher Jang,
  • Nicholas F. Lahens,
  • John B. Hogenesch,
  • and Amita Sehgal

  Genome Res. December 2015 25: 1836-1847; Published in Advance September 3, 2015, doi:10.1101/gr.191296.115
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  Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames

  • Peggy Janich,
  • Alaaddin Bulak Arpat,
  • Violeta Castelo-Szekely,
  • Maykel Lopes,
  • and David Gatfield

  Genome Res. December 2015 25: 1848-1859; Published in Advance October 20, 2015, doi:10.1101/gr.195404.115
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  Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

  • Monika S. Kowalczyk,
  • Itay Tirosh,
  • Dirk Heckl,
  • Tata Nageswara Rao,
  • Atray Dixit,
  • Brian J. Haas,
  • Rebekka K. Schneider,
  • Amy J. Wagers,
  • Benjamin L. Ebert,
  • and Aviv Regev

  Genome Res. December 2015 25: 1860-1872; Published in Advance October 1, 2015, doi:10.1101/gr.192237.115
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  The chromatin environment shapes DNA replication origin organization and defines origin classes

  • Christelle Cayrou,
  • Benoit Ballester,
  • Isabelle Peiffer,
  • Romain Fenouil,
  • Philippe Coulombe,
  • Jean-Christophe Andrau,
  • Jacques van Helden,
  • and Marcel Méchali

  Genome Res. December 2015 25: 1873-1885; Published in Advance November 11, 2015, doi:10.1101/gr.192799.115
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  Replication timing is regulated by the number of MCMs loaded at origins

  • Shankar P. Das,
  • Tyler Borrman,
  • Victor W.T. Liu,
  • Scott C.-H. Yang,
  • John Bechhoefer,
  • and Nicholas Rhind

  Genome Res. December 2015 25: 1886-1892; Published in Advance September 10, 2015, doi:10.1101/gr.195305.115
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  Noise in gene expression is coupled to growth rate

  • Leeat Keren,
  • David van Dijk,
  • Shira Weingarten-Gabbay,
  • Dan Davidi,
  • Ghil Jona,
  • Adina Weinberger,
  • Ron Milo,
  • and Eran Segal

  Genome Res. December 2015 25: 1893-1902; Published in Advance September 9, 2015, doi:10.1101/gr.191635.115
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