Table of Contents

Preface

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On the origin of Darwinism
- Hillary E. Sussman
Genome Res. May 2009 19: 691-692; doi:10.1101/gr.094458.109

Commentary

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One hundred fifty years without Darwin are enough!
- Francisco J. Ayala
Genome Res. May 2009 19: 693-699; doi:10.1101/gr.084285.108
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‘Why genomes in pieces?’ revisited: Sucking lice do their own thing in mtDNA circle game
- David M. Rand
Genome Res. May 2009 19: 700-702; doi:10.1101/gr.091132.109

Perspective

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Non-Darwinian estimation: My ancestors, my genes' ancestors
- Kenneth M. Weiss and
- Jeffrey C. Long
Genome Res. May 2009 19: 703-710; doi:10.1101/gr.076539.108
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Constructing genomic maps of positive selection in humans: Where do we go from here?
- Joshua M. Akey
Genome Res. May 2009 19: 711-722; doi:10.1101/gr.086652.108
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Genetic architecture of quantitative traits in mice, flies, and humans
- Jonathan Flint and
- Trudy F.C. Mackay
Genome Res. May 2009 19: 723-733; doi:10.1101/gr.086660.108
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Evolution under canalization and the dual roles of microRNAs—A hypothesis
- Chung-I Wu,
- Yang Shen,
- and Tian Tang
Genome Res. May 2009 19: 734-743; doi:10.1101/gr.084640.108
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On the origin of prokaryotic species
- W. Ford Doolittle and
- Olga Zhaxybayeva
Genome Res. May 2009 19: 744-756; doi:10.1101/gr.086645.108

Article

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Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes
- Paul J. Norman,
- Laurent Abi-Rached,
- Ketevan Gendzekhadze,
- John A. Hammond,
- Achim K. Moesta,
- Deepti Sharma,
- Thorsten Graef,
- Karina L. McQueen,
- Lisbeth A. Guethlein,
- Christine V.F. Carrington,
- Dasdayanee Chandanayingyong,
- Yih-Hsin Chang,
- Catalina Crespí,
- Güher Saruhan-Direskeneli,
- Kamran Hameed,
- Giorgi Kamkamidze,
- Kwadwo A. Koram,
- Zulay Layrisse,
- Nuria Matamoros,
- Joan Milà,
- Myoung Hee Park,
- Ramasamy M. Pitchappan,
- D. Dan Ramdath,
- Ming-Yuh Shiau,
- Henry A.F. Stephens,
- Siske Struik,
- Dolly Tyan,
- David H. Verity,
- Robert W. Vaughan,
- Ronald W. Davis,
- Patricia A. Fraser,
- Eleanor M. Riley,
- Mostafa Ronaghi,
- and Peter Parham
Genome Res. May 2009 19: 757-769; doi:10.1101/gr.085738.108

Methods

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The difficulty of avoiding false positives in genome scans for natural selection
- Swapan Mallick,
- Sante Gnerre,
- Paul Muller,
- and David Reich
Genome Res. May 2009 19: 922-933; doi:10.1101/gr.086512.108

Resource

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Recovering genome rearrangements in the mammalian phylogeny
- Hao Zhao and
- Guillaume Bourque
Genome Res. May 2009 19: 934-942; doi:10.1101/gr.086009.108
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Breakpoint graphs and ancestral genome reconstructions
- Max A. Alekseyev and
- Pavel A. Pevzner
Genome Res. May 2009 19: 943-957; Published in Advance February 13, 2009, doi:10.1101/gr.082784.108

Erratum

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Erratum
Genome Res. May 2009 19: 958

Preface

On the origin of Darwinism

Commentary

One hundred fifty years without Darwin are enough!

‘Why genomes in pieces?’ revisited: Sucking lice do their own thing in mtDNA circle game

Perspective

Non-Darwinian estimation: My ancestors, my genes' ancestors

Constructing genomic maps of positive selection in humans: Where do we go from here?

Genetic architecture of quantitative traits in mice, flies, and humans

Evolution under canalization and the dual roles of microRNAs—A hypothesis

On the origin of prokaryotic species

Article

Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes

Letter

Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories

Evolutionary descent of a human chromosome 6 neocentromere: A jump back to 17 million years ago

The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome

Global distribution of genomic diversity underscores rich complex history of continental human populations

Geographical structure and differential natural selection among North European populations

Fine-scaled human genetic structure revealed by SNP microarrays

Signals of recent positive selection in a worldwide sample of human populations

Darwinian and demographic forces affecting human protein coding genes

The apolipoprotein L family of programmed cell death and immunity genes rapidly evolved in primates at discrete sites of host–pathogen interactions

Adaptive evolution of young gene duplicates in mammals

Mosaic retroposon insertion patterns in placental mammals

Comparative analysis of Alu repeats in primate genomes

Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in Drosophila

General gene movement off the X chromosome in the Drosophila genus

The single mitochondrial chromosome typical of animals has evolved into 18 minichromosomes in the human body louse, Pediculus humanus

Alternative splicing of anciently exonized 5S rRNA regulates plant transcription factor TFIIIA

Methods

The difficulty of avoiding false positives in genome scans for natural selection

Resource

Recovering genome rearrangements in the mammalian phylogeny

Breakpoint graphs and ancestral genome reconstructions

Erratum

Erratum

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