Supplementary Figure 6. SFP markers identified with the RIL distribution method. Haplotypes of 148 RILs plus parental genotypes. Each column represents a RIL (first 148 columns) or parental genotype (last four columns). Rows correspond to SFP and microsatellite markers. Red boxes indicate Sha genotypes, blue boxes indicate Bay-0 genotypes, and grey boxes indicate markers scored as missing data. The text column (far right) lists the SFP marker IDs and the 38 microsatellite markers described in Loudet et al.¹⁶. The final column depicts the physical distances between the markers. Below the haplotypes, the proportions of Sha (red bars) and Bay-0 (blue bars) alleles in each RIL are depicted. A) SFP markers are arranged in physical order based on the Col-0 genomic sequence. The five Arabidopsis linkage groups are oriented vertically, laid end-to-end. B-F) Individual linkage groups. SFP markers are ordered by their genetic distances in linkage groups 1 to 5, respectively.