High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis

Supplementary Figure 2, West et al.



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Supplementary Figure 2B - Click for high-resolution image		 C
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Supplementary Figure 2E - Click for high-resolution image		 F
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Supplementary Figure 2. GEMs identified with the parental min-max method. Haplotypes of 148 RILs plus parental genotypes. Each column represents a RIL (first 148 columns) or parental genotype (last four columns). Rows correspond to GEMs and microsatellite markers. Red boxes indicate Sha genotypes, blue boxes indicate Bay-0 genotypes, and grey boxes indicate markers scored as missing data. The text column (far right) lists the GEM IDs and the 38 microsatellite markers described in Loudet et al.16. The final column depicts the physical distances between the markers. Below the haplotypes, the proportions of Sha (red bars) and Bay-0 (blue bars) alleles in each RIL are depicted. A) GEMs are arranged in physical order based on the Col-0 genomic sequence. The five Arabidopsis linkage groups are oriented vertically, laid end-to-end. B-F) Individual linkage groups. GEMs are ordered by their genetic distances in linkage groups 1 to 5, respectively.

This Article

  1. Published in Advance May 15, 2006, doi: 10.1101/gr.5011206 Genome Res. June 2006 vol. 16 no. 6 787-795
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