From ORFeomes to Protein Interaction Maps in Viruses
Supplementary information on Uetz et al.
Bacteriophage T7 protein interactions, based on Bartel et al. Nature Genetics 12: 72 (1996)
|
(A) interactions among T7 proteins |
|
Protein A |
Protein B |
Swiss A |
Swiss B |
PubMed |
|
gene 0.3 |
gene 0.3 |
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gene 0.7, protein kinase |
gene 4.5 |
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gene 1, T7 RNA polymerase |
gene 1, T7 RNA polymerase |
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gene 1.3 |
gene 1, T7 RNA polymerase |
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gene 1.7 |
gene 1.7 |
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gene 10, minor capsid protein |
gene 10, minor capsid protein |
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gene 11, tail protein |
gene 2.5, ssb |
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gene 12, tail protein |
gene 12, tail protein |
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gene 15, internal virion protein |
gene 16, internal virion protein |
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gene 16, internal virion protein |
gene 16, internal virion protein |
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gene 17, tail fiber protein |
gene 17, tail fiber protein |
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gene 18.5 |
gene 18.7 |
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gene 19, DNA maturation protein |
gene 4.7 |
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gene 2, E. coli RNA pol.inhibitor |
gene 3, endonuclease |
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gene 2.5, ssb |
DNA polymerase |
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gene 2.5, ssb |
gene 4, primase/helicase |
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gene 2.5, ssb |
gene 2.5, ssb |
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gene 3,endonuclease |
gene 3, endonuclease |
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gene 3.5, lysozyme |
gene 1, T7 RNA polymerase |
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gene 3.5, lysozyme |
gene 3.5, lysozyme |
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gene 4, primase |
gene 4, primase/helicase |
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gene 4, primase |
gene 4, primase |
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gene 4, primase/helicase |
gene 4, primase/helicase |
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gene 4, primase/helicasee |
gene 5, DNA polymerase |
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gene 4.5 |
gene 0.3 |
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gene 4.7 |
gene 4.7 |
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gene 5, DNA polymerase |
gene 4.7 |
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gene 5, DNA polymerase |
gene 6.5 |
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gene 5.3 |
gene 5.3 |
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gene 6.5 |
gene 6.5 |
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gene 8, head-tail connector |
gene 8, head-tail connector |
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gene 9, scaffolding protein |
gene 10, minor capsid protein |
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(B) virus-host interactions (i.e. T7 - E. coli) |
|
Protein A (T7) |
Protein B (E. coli) |
Swiss A |
Swiss B |
PubMed ID |
|
gene 0.3 |
M.EcoKI |
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gene 1.2, dGTPase inhibitor |
dGTPase |
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gene 2, E. coli RNA pol.inhibitor |
E.coli_RNA polymerase |
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gene 5, DNA polymerase |
E.coli thioredoxin |
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Structural information on T7 proteins |
|
gene |
name |
PDB |
|
0.3 |
Ocr |
|
|
1 |
RNA polymerase complex with T7 promoter |
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1 + 3.5 |
RNA polymerase complex with T7 lysozyme |
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1 |
T7 RNA elongation complex |
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1.3 |
DNA ligase |
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2.5 |
Single-stranded DNA binding protein |
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3 |
T7 endonuclease |
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3 |
T7 endonuclease |
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3.5 |
T7 lysozyme |
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|
4 |
helicase domain |
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|
4 |
Primase fragment of T7 |
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|
4 |
Primase-Helicase |
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|
5 |
T7 DNA Polymerase-DNA |
This Article
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doi: 10.1101/gr.2583304 Genome Res. October 15, 2004 vol. 14 no. 10b 2029-2033
