Tracking the Evolution of the SARS Coronavirus Using High-Throughput, High-Density Resequencing Arrays

Suppl. Table 2.  List of SARS-CoV sequences in the NCBI Nucleotide database as of August 7th, 2003.
GI Accession Definition
33304219 AY351680.1 SARS-CoV ZMY 1, complete genome
33411459 AP006561.1 SARS-CoV TWY genomic RNA, complete genome
33411444 AP006560.1 SARS-CoV TWS genomic RNA, complete genome
33411429 AP006559.1 SARS-CoV TWK genomic RNA, complete genome
33411414 AP006558.1 SARS-CoV TWJ genomic RNA, complete genome
33411399 AP006557.1 SARS-CoV TWH genomic RNA, complete genome
30027610 AY278554.2 SARS-CoV CUHK-W1, complete genome
33188324 AY348314.1 SARS-CoV Taiwan TC3, complete genome
32493130 AY338175.1 SARS-CoV Taiwan TC2, complete genome
32493129 AY338174.1 SARS-CoV Taiwan TC1, complete genome
30271926 NC_004718.3 SARS-CoV, complete genome
33115118 AY323977.2 SARS-CoV HSR 1, complete genome
32454358 AY322199.1 AY322197S3 SARS-CoV Shanghai QXC Orf3a gene, partial cds; Orf4b, envelope protein E, membrane glycoprotein M, and Orf6 genes, complete cds; and Orf7a gene, partial cds
32454357 AY322198.1 AY322197S2 SARS-CoV Shanghai QXC orf1ab polyprotein gene, partial cds
32454356 AY322197.1 AY322197S1 SARS-CoV Shanghai QXC orf1ab polyprotein and orf1a polyprotein genes, partial cds
32454355 AH013000.1 SEG_AY322197S SARS-CoV Shanghai QXC orf1a polyprotein, orf1ab polyprotein, orf1ab polyprotein, and Orf3a genes, partial cds; Orf4b, envelope protein E, membrane glycoprotein M, and Orf6 genes, complete cds; and Orf7a gene, partial cds
32454342 AY322208.1 AY322205S4 SARS-CoV Shanhgai LY Orf7a gene, partial cds; and Orf7b, Orf8A, Orf8b, and nucleocapsid protein genes, complete cds
32454341 AY322207.1 AY322205S3 SARS-CoV Shanhgai LY orf1ab polyprotein gene, partial cds; spike glycoprotein gene, complete cds; and Orf3a gene, partial cds
32454340 AY322206.1 AY322205S2 SARS-CoV Shanhgai LY orf1a polyprotein and orf1ab polyprotein genes, partial cds
32454339 AY322205.1 AY322205S1 SARS-CoV Shanhgai LY orf1ab polyprotein and orf1a polyprotein genes, partial cds
32454338 AH012999.1 SEG_AY322205S SARS-CoV Shanhgai LY orf1a polyprotein, orf1ab polyprotein, orf1a polyprotein, orf1ab polyprotein, and orf1ab polyprotein genes, partial cds; spike glycoprotein gene, complete cds; Orf3a and Orf7a genes, partial cds; and Orf7b, Orf8A, Orf8b, and nucleocapsid protein genes, complete cds
31873092 AY321118.1 SARS-CoV TWC, complete genome
32187341 AY323976.1 SARS-CoV ZJ01 spike glycoprotein mRNA, complete cds
32187339 AY323975.1 SARS-CoV ZJ01 small envelope E protein mRNA, complete cds
32187337 AY323974.1 SARS-CoV ZJ01 membrane glycoprotein M mRNA, complete cds
30468046 AY283798.1 SARS-CoV Sin2774, complete genome
30468045 AY283797.1 SARS-CoV Sin2748, complete genome
30468044 AY283796.1 SARS-CoV Sin2679, complete genome
30468043 AY283795.1 SARS-CoV Sin2677, complete genome
30468042 AY283794.1 SARS-CoV Sin2500, complete genome
31982987 AY286320.2 SARS-CoV isolate ZJ-HZ01 orf1ab polyprotein gene, partial cds
31505969 AY290752.1 SARS-CoV ZJ-HZ01 nucleocapsid protein, uncharacterized protein 9b, and uncharacterized protein 9c genes, complete cds
31581502 AY291315.1 SARS-CoV Frankfurt 1, complete genome
31540948 AY307165.1 SARS-CoV nucleocapsid protein (NP) gene, complete cds
31416306 AY279354.2 SARS-CoV BJ04, complete genome
31416305 AY278490.3 SARS-CoV BJ03, complete genome
31416292 AY278487.3 SARS-CoV BJ02, complete genome
31416290 AY278489.2 SARS-CoV GZ01, complete genome
30910859 AY297028.1 SARS-CoV ZJ01, complete genome
30909287 AY286402.1 SARS-CoV Taiwan JC-2003 RNA-directed RNA polymerase (pol) gene, partial cds
30248028 AY274119.3 SARS-CoV TOR2, complete genome
30698326 AY291451.1 SARS-CoV TW1, complete genome
30523247 AY271716.1 SARS-CoV Tor2 RNA polymerase 1b mRNA, partial cds
30421451 AY282752.1 SARS-CoV CUHK-Su10, complete genome
30314341 AY268070.1 SARS-CoV Hong Kong/03/2003 RNA-directed RNA polymerase gene, complete cds
30275666 AY278488.2 SARS-CoV BJ01, complete genome
30027617 AY278741.1 SARS-CoV Urbani, complete genome
30026016 AY268049.1 SARS-CoV Taiwan RNA-directed RNA polymerase (pol) gene, partial cds
30023963 AY278491.2 SARS-CoV HKU-39849, complete genome
30013621 AY269391.1 SARS-CoV Vietnam strain 200300592 polymerase gene, partial cds

This Article

  1. doi: 10.1101/gr.2141004 Genome Res. March 2004 vol. 14 no. 3 398-405

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