Shuffling of Genes Within Low-Copy Repeats on 22q11 (LCR22) by Alu-Mediated Recombination Events During Evolution
A3 1 GGCTGGGCACGGTGGCTCACGCCTGTAATCCCTGCACTTTGGGAGACTGA
A3b1 1 ---------- ---------- ---------- ---------- ----------
A3b2 1 ---------- ---------- ---------- ---------- ----------
AluY 1 GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA
A3 51 GGTGGGCAGATCATGAGGTCAGGAGATTGA GACCATCCTG GCTAACACGG
A3b1 1 ---------- ---------- TTAATGCAAC CTGCTGAAAATAGGCATGGA
A3b2 1 ---------- ---------- TTAATGCAAC CTGCTGAAAATAGGCATGGA
AluY 51 GGCGGGCGGATCACGAGGTCAGGAGATCGA GACCATCCTG GCTAACACGG
A3 101 TGAAACCCTG TCTCTACTAAAAATACAAAAAGTTAGCCGG GCGTGGTGGC
A3b1 31 AAAACTAGAAAATCTAGAAAAATTAGAAAA TCACTGAAGAGGATTTTCTT
A3b2 31 AAAACTAGAAAATCTAGAAAAATTAGAAAA TCACTGAAGAGGATTTTCTT
AluY 101 TGAAACCCCG TCTCTACTAAAAATACAAAAAATTAGCCGG GCGTGGTGGC
A3 151 GGGCGCCTGT AGTCCCAGCCACTCGGGAGGCTGAGGAGGGAGAATCGTTT
A3b1 81 TAAAAAAATA CATACTTTAAACTCGGGAGGCTGAGGAGGGAGAATCGTTT
A3b2 81 TAAAAAAATA CATACTTTAAACTCGGGAGGCTGAGGAGGGAGAATCGTTT
AluY 151 GGGCGCCTGT AGTCCCAGCT ACTCGGGAGGCTGAGGCAGGAGAATGGCGT
A3 201 GAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTC
A3b1 131 GAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTC
A3b2 131 GAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTC
AluY 201 GAACCCGGGAGGCGGAGCTTGCAGTGAGCC GAGATCGCGCCACTGCACTC
A3 251 TAGCCTGGGCTACAGGGCAAGACTCCATTAAAaaaaaaaa aaaaaaaacc
A3b1 181 TAGCCTGGGCTACAGGGCAAGACTCCATTAAAaaaaaaaa ---aaaaacc
A3b2 181 TAGCCTGGGCTACAGGGCAAGACTCCATTAAAaaaaaaaa ---aaaaacc
AluY 251 CAGCCTGGGC GACAGAGCGAGACTCCGTCT CA-------- ----------
A3 301 agcaaaaaccaaacaaaacataatgcatgttctctcttataaatgggagc
A3b1 228 agcaaaaaacaaacaaaacataatgcatgttctctcttataaatgggagc
A3b2 228 agcaaaaaccaaacaaaacataatgcatgttctctcttataaatgggagc
AluY 283 ---------- ---------- ---------- ---------- ----------
A3 351 taaacatggggactcattgacttaaagatggcaacaactgggaactgc--
A3b1 278 taaacatggggactcattgacttaaagatggcaacaactgggaactgctg
A3b2 278 taaacatggggactcattgacttaaagatggcaacaactgggaactgctg
AluY 283 ---------- ---------- ---------- ---------- ----------
A3 399 ---------- --------
A3b1 328 gatggggagggaggggag
A3b2 328 gatggggagggaggggag
AluY 283 ---------- --------
