4.5-Mb YAC STS contig at 50-kb resolution, spanning Xq25 deletions in two patients with lymphoproliferative syndrome.

 

 

 

 

 

STS Name DXS Number Alias 1 Size (bp) Buffer Primer A Primer B GenBank Acc GDB ID Source
sWXD43 DXS100 DXS100C-168 168 TNK100 GCTTAGAGTGCTAGTTTAGG AGAGAATGGGGACTTTAAGAGG L14992 G00-192-511 SCHLESSINGER
sWXD174 DXS1321 734L 204 TNK50 CCACTGCCTTTAGAAAAACAC ATTCACTGAGAACAAGACAAAAAC L15227 G00-235-865 "NAGARAJA,R."
sWXD201 DXS7456 F5A1L 64 TNK100 CATATCATTCCACTGCCTTC AAAGAAATTATCAGTCACCTTCTC L24595 G00-584-187 CGM
sWXD269 DXS7808 XY788R 149 TNK100 CTTTGGGAGATGTTGGTTTG AGATATTATGCCATTAAGCAGGAG L24576 G00-600-706 "PORTA,G."
sWXD299 DXS737 DXS737 167 TNK100 GAGGAAAAAATCAAGTCCATGT TGTCTAGTGTATGACTCATCTCCA M87768 G00-182-659 J.MURRAY/GDB
sWXD397 DXS7824 XSTS3240 189 TNK100 CATAAATCTCAACTTTGGTTTCTC TGGCTCCAGGAAAATATGC L24619 G00-600-763 "PILIA,G."
sWXD413   XSTS5118 78 TNK50 CTCACTGTTGCTGTAATACTTC CATTATTGATAGGGGGAGG L24635   CGM
sWXD416 DXS8212 F11C4R 104 TNK100 TTTATCTTCAAACTATGTATGCCC ATTGTATCTGAGATTACTGTTGTG L24602 G00-637-708 CGM
sWXD443 DXS7831 734R 195 TNK100 TTAAGTCAGTTTTTCCAAAAGCAC ATCTTATTTGATCCTTGCATTTCC L25167 G00-600-784 "NAGARAJA,R."
sWXD525 DXS7843 F1F4L 97 TNK100 CATGCACTGAGTGTTATGG CGGGTTCATCCTAATCAAG L24603 G00-600-820 CGM
sWXD585 DXS6 DXS6 151 TNK100 TCAAAGTGATGGCAGATTCAGTG GGAAATGTTATTAGGATAGGGG     "PORTA,G."
sWXD596 DXS75B DXS75B 199 TNK100 AATCATATCAAGTGTCTTTTCTGG ATAAGTTTTTGGCATGTTCTGTTTC     "PORTA,G."
sWXD620 DXS7860 F20F11R 146 TNK100 ATTCCCCTCTCCCCCATTG CCCCAGAACCTTGTAAGAATC L24593 G00-600-877 CGM
sWXD839   515R 82 TNK100 TTTTGAAAGCATTCTATGGCAATC ATGAAGTATTACAGCAACAGTGAG L24614 1238759 "PILIA,G."
sWXD862 DXS7412 I97C12R 82 TNK100 AGTGAACTATAACCTAACTTGATG GTCCTCTATTGGCTAAAACTC L41322 G00-556-512 "MUMM,S."
sWXD868 DXS7415 449L 80 TNK100 AGAATATCAGCAAAGATAGAGAAG TATGTATTTTTCTGTTGTTGGGTG L41210 G00-556-521 "PENGUE,G."
sWXD875   F24C3L 108 TNK50 CACAACAAAACACTAGACATTTCC CTCCCTTAAATTGCCTATATTTCC L78123   "PORTA,G."
sWXD914 DXS1206 AFM269ya5 167 TNK100 CACAATCTGCTGTCTGCAAT AGCATGGGACTTCTCAACC Z23914 G00-199-640 WEISSENBACH
sWXD918   E143H6R 122 TNK100 CAATATGGCATCAAGTCATGTTTC TCCTAATGGCTTAGTGGTC L24876 1296865 "NAGARAJA,R."
sWXD921 DXS8212 367R 61 TNK100 TTTATCTTCAAACTATGTATGCCC ATGAAACATTCTTGACAAACTCAG L77994   "PENGUE,G."
sWXD986   S7.043-61 61 TNK100 ATCAGGCAGAAATTTGGGGG GACTCTGATGCACTCTTCAG L42649 1238560 CGM
sWXD1001 DXS7263 I246G6L 91 TNK100 GTGGAGGAGAGGTTTATATTTTG GGAAGGCAATGATACCAAC L41277 G00-556-065 "MUMM,S."
sWXD1074   F20A8R 110 TNK50 GTTCGTGGCTTACAGAATC CAGAGGCTCAGAGAGAATC L47776   CGM
sWXD1090 DXS7280 I182G11R 86 TNK100 CAAATAGAGCTTATTCTAGGTTGG GGAAATGATTCTACAGCTTTTGGG L41278 G00-556-116 "MUMM,S."
sWXD1095 DXS7282 162L 61 TNK100 GAATTCAATAATTTTACTGTGTTTCTCAC CACTGAGTTATCAGGCCAGCTG L41187 G00-556-122 "NAGARAJA,R."
sWXD1096 DXS7283 508L 83 TNK100 ATCAAGGCATAGTTATCAAATGAG CTATGACTGCTGTTGTAGG L41188 G00-556-125 "NAGARAJA,R."
sWXD1097 DXS7284 510L 75 TNK100 CGATGCTGCACTTCTTTTGCTGTGTG GATGTAAATACCTTAGTTCTTCTTAG L41333 G00-556-128 "NAGARAJA,R."
sWXD1103 DXS7288 I182G11L 130 TNK100 TAAGAGAAGGAGGACTAGG CTACACAAATGGTAAGTGACTGG L41280 G00-556-140 "MUMM,S."
sWXD1110 DXS7289 I65H7L 115 TNK100 CCTTGATTTCCTTTCTATTCTTTG GAAGTGAACTGGATATTGGTG L41281 G00-556-143 "MUMM,S."
sWXD1291   I317A8L 99 TNK100 TGCTATCCCTCTGCTGATG GCTTCTTGTTGGTGAAACTG L77659 1296881 "PORTA,G."
sWXD1292   I317A8R 90 TNK100 AGTGTAGAAAAAGAAGTAGGTAAG CTTCGTCAAACTCTCACCC     "PORTA,G."
sWXD1333   XSTS4832 178 TNK100 ATGTTTTGGGGCATTGGGG AAAGTGAAGGGTAGAGTAAATTTG L77266 1296827 CGM
sWXD1335   F4C3L 120 TNK100 TGATTGTTTGACCCCACCC ACAGCTCTGTGTATCAGACC L47789   CGM
sWXD1340 DXS8246 F2F9R 128 TNK100 AAGGGGGTATTGGTTGTAG CCTATAAAGTCTTCCATAACATTG L48036 G00-668-407 "PORTA,G."
sWXD1350 DXS7295 E97H7L 136 TNK100 CACCCCTACATCTTCTAATC GGCATTCACTAACCCATTAAC L41192 G00-556-161 "NAGARAJA,R."
sWXD1351 DXS7296 831R 102 TNK100 GTTAGGAGGAGGAGAAATG GTTTTGTGAATGAGAGTATAGAAG L41193 G00-556-164 "MUMM,S."
sWXD1376 DXS7297 E33H3R 77 TNK100 ATTCGTGTTCACTTCAGCC AGATTGTAAATTGCACTTTGAACC L41194 G00-556-167 "NAGARAJA,R."
sWXD1465 DXS8356 F22C4R 92 TNK100 TCTCCTCCTACAATCCATC AACAACTTGGTGGTCTCTGTC L48000 G00-681-639 CGM
sWXD1489   CF1a 233 TNK100 TCACGGTATTAGTAGATGCTGGTG AGGTGTTATGTGGATTGTAGAGTG D16468 1238713 GENBANK
sWXD1503 DXS7668 I216A12L 105 TNK100 GAATTCATTAGTTAAGGACTCAC CCTAAAAGTCATTACCTTTAGCG L41195 G00-600-283 "MUMM,S."
sWXD1505 DXS7312 I216A12R 83 TNK100 AAAGGAGGAGAGGATGAGG TTAGATAGTGTTTGAGCACAATTC L41196 G00-556-212 "MUMM,S."
sWXD1506 DXS7313 818R 105 TNK100 AAAGGTAAGTGTTTAGGTAATGAG TAGCAGAAGAGTGGGAAAG L41197 G00-556-215 "MUMM,S."
sWXD1541   DF83 353 TNK100 AGGAATGCACCTACATATGTGGCA CAGACTGCTTATTTATGGAGATCC D16470 1238562 GENBANK
sWXD1610 DXS1046 AFM147xc7 143 TNK100 GGNCTTAGACACACGGTAGT ATTTGTATTCACCTGGAGGC   G00-189-351 WEISSENBACH
sWXD1611 DXS8009 AFMa119xf1 253 TNK100 AGCCTTCGTCCTCTATATATTTC GCAATTCAAAAGATTCTGATTAATT   603146 WEISSENBACH
sWXD1612 DXS8044 AFM203ze11 273 TNK100 CAAGGTTGAAAGGGCA AAATGTAGCAGATGCCAAT   609462 WEISSENBACH
sWXD1613 DXS8078 AFM273zc5 202 TNK100 TGCATCCCCATAGTAATTGGT CAAATGGCAGGATTTCCC   612060 WEISSENBACH
sWXD1616 DXS8093 AFMa045yc5 156 TNK100 AAGGGCAGGTTTTTTG AGGGCTCTGAGGACTG   613491 WEISSENBACH
sWXD1644   AFM240XB10 170 TNK50 CATGTAGAGCAAACAAACCCTA TGCAGTATTTCCCCAGTGTATT Z66856 1223323 WEISSENBACH
sWXD1749   PF12 205 TNK100 GCAATGCCTTATATGAATGCAGTG ATGATCAGGGTCACTTTCTGTGAG D16477 1238715 GENBANK
sWXD1839 DXS7745 F33B3R 93 TNK100 GGGAGTATAATGAGTAGAAGTATC TTGTTTCCTTTGCTGCACAAAATG L42707 G00-600-514 "WEIN,M."
sWXD1848 DXS7343 503L 87 TNK100 GTATCGAGGATCACATTTCAAC CTCATCACAGTATCTGACATATAG L41158 G00-556-305 "MIAO,J."
sWXD1849 DXS7749 383L 80 TNK100 GGAAAGAAGGAAGTGAAGTTTTAC CACATTTGCTTCATAGCACTC L42710 G00-600-526 "MIAO,J."
sWXD1914 DXS8038 AFMa288xd5 132 TNK100 GTGGACTGTCTCCGTAACC CCAAGATGTGAGCATTTTTC   608337 WEISSENBACH
sWXD1982 DXS7771 F33B3L 68 TNK100 GATGAGCAAATAATAGTCAAGTGG CACTGGGTTATGTGCTTTTC L42726 G00-600-592 "WEIN,M."
sWXD1984   636R 360 TNK100 ATTTTCTTTGGGAATAATCACCTC TCTCTTCTCCTTTTATACACTATC     "MIAO,J."
sWXD1985 DXS7346 503R 130 TNK100 GAATAAGAACCTTGTTGCTTTTAG CAAACACTTATGTTGTGCTGG L41108 G00-556-314 "MIAO,J."
sWXD2011   515L 100 TNK100 TAGATGAATCTTAACTATGTCTGC CTGGTTGGTGAAAACTAGG L78122   "PILIA,G."
sWXD2060 DXS7359 F16A7R 134 TNK100 CAGAACTTCCTTCTTAATACAAAC CTTTGGCAGCAAATATCCTC L41200 G00-556-353 "NAGARAJA,R."
sWXD2062 DXS8262 I99F10R 63 TNK100 TCTCCCACTGAAGGATATG CATAGCATGTTTATTTGTAATAGCC L47482 G00-668-456 "NAGARAJA,R."
sWXD2063 DXS7777 M847B2L 84 TNK100 TCTTGAGCTGAGATCATCC CTCAAATCTCTTTTTCTCTCCC L41803 G00-600-610 "MACMILLAN,S."
sWXD2076 DXS7780 I208G4R 185 TNK100 GTTTATTTGTGCTGAGTTGCC CTATCAGTAGATTGTAGAGCCC L42730 G00-600-619 CGM
sWXD2145 DXS6811 GATA8F08 214 TNK100 CATTTTTCCAGTGCCAGAT TGCTGGGAGGCTTTTTATTA   G00-366-394 CHLC
sWXD2191 DXS7362 25L 107 TNK100 ACCACCCACAGAGAGCAAG ACAATCCCCCATCTCCTCC L41203 G00-556-362 "MACMILLAN,S."
sWXD2192 DXS7363 147L 80 TNK100 CCCCAAAACTCTTTGCAGAAC ACCTAAGCCCCAAGACAAACC L41204 G00-556-365 "NAGARAJA,R."
sWXD2193 DXS7364 195L 102 TNK100 GCTTAAATTCACGCATTATACTGG ATTCTTTCCCTTTATCAGTTTTTGAG L41205 G00-556-368 "NAGARAJA,R."
sWXD2194 DXS7365 25R 178 TNK100 GAGGCAGTGGATAACAGTTGGGG CTCACAACCCTACACTTTTACATTAC L41206 G00-556-371 "MACMILLAN,S."
sWXD2195 DXS7366 XSTS0195 64 TNK100 TGTCACAATTTAGCGAACATTGC GATAAATACGCTAGTGTTATAACC L41207 G00-556-374 "NAGARAJA,R."
sWXD2196 DXS8263 318R 88 TNK100 GCATTTTCTCTTAGTCTGTGG CTGGACATTATAAAAATTAGCAATGC L47527 G00-668-459 "NAGARAJA,R."
sWXD2197 DXS7367 XSTS0147 104 TNK100 AAACTGTTACCTTGCCTG CTAGATGAAGATTAAAATTTGACTCC L41208 G00-556-377 "NAGARAJA,R."
sWXD2198 DXS7368 I240E2L 62 TNK100 CAAATCTACACTGCTTTTCATTGG GGAATACAAAGGGGACAGG L41209 G00-556-380 "MACMILLAN,S."
sWXD2199 DXS7792 I126H5L 120 TNK100 CACATCAGCATTTCTTCTCAATC AAAACTACACCAATCAAAACTGTC L42742 G00-600-655 "MACMILLAN,S."
sWXD2205 DXS8300 XDB-D12 105 TNK100 TCCCCCAGAAGAGATTGAC GTTCTATCCAGGCACTCAG L47528 G00-677-336 "PORTA,G."
sWXD2471   XSTS0516 64 TNK100 CAGATTCAGAGGGAATTACTTAAC CATATTGGGAATAACACTTAACAC     "NAGARAJA,R."
sWXD2526 DXS8301 64F1L 113 TNK100 GCAAAGTAGAGAACCATTTCC GGCACAAAAATCCCCCAAG L48006 G00-677-339 "MACMILLAN,S."
sWXD2703 DXS7511 DXS7511 129 TNK100 GCGAGGTCAGGTCAATGAAA TCATTATTTAGGATTGACATTTTGG G05260 G00-588-700 GDB
sWXD2777 DXS8304 XSTS0856 102 TNK100 CACCCCAGCAACAATTATTAAC ACATTCTCCTTGATCTCAATGAAC L48009 G00-677-348 "MIAO,J."
sWXD2892 DXS982 DXS982 800 TNK50 GGTCATTATGAATGGTCAAAAGGAATTTGACTGC CCGTCACATATAGAGATAGTATTACTGAACC   G00-216-814 "BENTLEY,D."
sWXD2932   XSTS1845 86 TNK100 ATTGATGGGTAATTACAG GATGGGATTATTTTTATTC L77322 1296839 "MIAO,J."
sWXD2955   I27E3L 132 TNK50 CTAGAAATGAAATAGAAAGGGAAC GGTAGAAAAAGGAAGAATGTAGAG L77308 1297109 CGM
sWXD3105   M727D3R 102 TNK100 AACTATTCAGAGGAGAGGG CTGTAGTTTTCTTGTTTTATGTGTC L77626 1297147 "NAGARAJA,R."
sWXD3122 DXS731 DXS731 100 TNK100 CTCACCATTGGGTCTTCATACA TATGATAGGCATGAATTGTGTCTG M87767 G00-182-276 HUDSON
sWXD3128   M802A8L 109 TNK100 CACTAATGCACTACAATTTAACTC GTAAATAACAGAAAGACTGGTAAAAG L77635   "NAGARAJA,R."
sWXD3129   XSTS7038 76 TNK100 GATTTCAATGTGTTGCTGGG ACAGGAAACACGAAAATGCAAGG L77262 1296841 "NAGARAJA,R."
sWXD3130   I158C1L 123 TNK100 TCAAACCATTCCCAAAGCC ATTCACACTTTTATCACCCATTTC L77754 1297113 "NAGARAJA,R."
sWXD3131   I275H8R 127 TNK100 GGACAGATTATTTGGACAGG CATAAGACAGATTATAGCAGACAG L77636   "NAGARAJA,R."
sWXD3137   yX145F1R 119 TNK100 GACAGTTAATTTCAAGGGTGAG CATAATGTGTTAGGCATTTGTGAG L77641   "NAGARAJA,R."
sWXD3265   I345F2R 116 TNK100 TCAGTATCAGTCAATGAATGAAGG TGAGAGAAAGTGGGGGTGG L77646   "NAGARAJA,R."
sWXD3266   yX34G7R 98 TNK100 TCTTTTAAGTTCTGTTCCCTTTTG TATGGCTTGGTTCCCTTTG L77647   "NAGARAJA,R."
The sWXD accession name (see Methods) is shown, along with DXS numbers, aliases, and sizes of amplified products. Where DXS numbers are not given, STSs have been submited and numbers requested. All sequences, incuding those not yet given GenBank accession numbers, are available on the Center for Genetics in Medicine web page (see Methods). A hyperlinked version of these data is also available at http://www.cshl.org/journals/gr.


This Article

  1. doi: 10.1101/gr.7.1.27 Genome Res. January 1997 vol. 7 no. 1 27-36

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