Candidate Regulatory Sequence Elements for Cell Cycle-Dependent Transcription in Saccharomyces cerevisiae

Table 1.

Position-Independent Hexamers (Over-Represented Hexamers)

A. Hexamers and/or reverse complements
B. Hexamers
graphic
  • The number of upstream regions in each of the five sets of cell cycle-regulated genes containing one or more copies of a hexamer was counted. The counts are indicated in the column labeled “No.” The contribution to the χ2 score made by each of the data sets is shown, along with the total value of the χ2 score. The data set(s) that make the greatest contribution to χ2 are indicated in boldface type.P values for each χ2 score were calculated from a Monte Carlo simulation. The final column shows the number of upstream regions of the non-cell cycle-regulated genes containing one or more copies of each hexamer. These counts are shown for illustrative purposes only; the numbers were not included in the χ2calculation.

This Article

  1. Genome Res. 9: 775-792

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