Efficient Approach to Unique Single-Nucleotide Polymorphism Discovery

Table 1.

Results of Scanning for SNPs using Methods 1 and 2

Xq GenBank STS accession no. No. of bases sequenced Method 1 Method 2
rare SNPs informative SNPs rare SNPs informative SNPs
3840 G42862 870 0 1 1 1
3841 G42863 755 0 1 0 1
3843 N.S. 200 N.U.
3844 G42864 790 0 0 0 0
3845 G42865 750 0 0 0 0
3846 G42866 865 0 1 1 1
3847 G42867 850 0 1 0 1
3849 G42868 829 0 1 0 1
3851 G42869 650 0 0 0 0
3852 G42870 773 0 0 0 0
3853 G42871 500 0 0 0 0
3855 G42872 790 0 1 0 1
3856 G42873 830 0 0 0 0
3857 N.S. 500 N.U.
3858 G42874 820 0 0 1 0
3859 G42875 680 0 0 0 0
3860 G42876 470 0 0 0 0
3861 G42877 520 0 0 0 0
3862 G42878 485 0 1 0 1
3863 G42879 880 0 0 0 0
3864 G42880 725 0 0 0 0
3865 G42881 445 0 0 0 0
3866 G42882 605 0 0 0 0
3867 G42902 585 0 0 0 0
3868 G42883 730 0 1 0 1
3870 G42884 850 0 0 0 0
3871 G42885 930 0 0 1 0
3872 G42886 900 0 0 0 0
3875 G42887 900 0 2 0 2
3879 G42888 860 0 1 0 1
3880 G42903 700 0 0 0 0
3881 G42889 860 0 0 0 0
3884 G42890 525 0 0 0 0
3885 G42891 750 1 0 1 0
3886 G42892 800 0 0 2 0
3888 G42893 750 0 0 1 0

  • (N.S.) Not submitted; (N.U.) not unique.

  • ↵Rare SNPs are those with allelic frequencies <0.20.

  • ↵Informative SNPs are those with allelic frequencies >0.20.

This Article

  1. Genome Res. 9: 499-505

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