Construction of a Linkage Map of the Medaka (Oryzias latipes) and Mapping of the Da Mutant Locus Defective in Dorsoventral Patterning

Table 2.

Nucleotide Polymorphisms Between the HNI Strain and the DaMutant

Size compared (bp) Single-nucleotide polymorphism Insertions or deletions Total No. of polymorphisms
Anonymous STS markers 2446 77 5 82
 frequency (poly./bp) 1/32 1/489 1/30 
Known genes (intron) 1887 50 8 58
 frequency (poly./bp) 1/38 1/236 1/33 
Known genes (exon) 3241 27 (3) 0 27
 frequency (poly./bp) 1/120 0 1/120

  • ↵The number of nonsynonymous substitutions is shown in parenthesis.

  • ↵Polymorphisms only in the coding regions were compared.

This Article

  1. Genome Res. 9: 1277-1287

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