Construction of a Linkage Map of the Medaka (Oryzias latipes) and Mapping of the Da Mutant Locus Defective in Dorsoventral Patterning

Table 1.

STS Markers

Marker name GenBank Acc. no Primer pairs Size Polymorphism LG
stsB07-3 AB030355 CCAGATCCACCCCAGCAGAA 445 sequence-specific PCR amplification VIII
AB030356 CAGGAGTTTCCTGACATGCG
GCTCACTGTTCTGGATCATC 335/334 size
CACGACACCAAGAGAAACTC
stsM02-5 AB030357 ACGGAGCAAAGACGGACAA 451 RFLP after cutting withHinfI VIII
AB030358 TGCCAGTCAGGAGTCTGACTA
stsM63-1 AB030359 TTGGGTGGGCAGGAAAGAT 405 RFLP after cutting withHinfI VIII
ACGCAAAAAGCAACACAGGG
stsM90-3 AB030360 CCTGCAGCATAGAAGCCTTTG 491/475 Size VIII
AB030361 AAGGGAATGTCCAAAGGAGC
stsNTU29-3 AB030362 GCTGACTCCTGGTATGAAG 773 RFLP after cutting withSfaNI VIII
GAACTCTATAGCAGGTGAGC
stsOPQ05-1 AB030363 AATCTGCCAGGATCCAGTCA 556 RFLP after cutting withHinfI I
CCTACGGAGCGGTCATTTCTGTAG
stsOPR04-1 AB030364 GCAGGCATCATTCATAATGC 458 RFLP after cutting withAluI I
AB030365 GAGTTGCTGCAAGGTCAAAG
stsOPS11-1 AB030366 CTGCTCCACCGTAGAAAGCC 341 sequence-specific PCR amplification VIII
AB030367 CACTCGTTCAGGTCGTTCAG
CGAAGAACTATGTGCTTTCC 629/587 size
TAGGACCACTGTGGACTTAG
stsOPU19-2 AB030368 CATCATTCAGTCCCCATAA 418 sequence-specific PCR amplification XVI
TGGAGGGACAAGATGCACAG
stsOPU19-3 AB030369 GTTACTCTGAGGGGACAAAC 310 RFLP after cutting withMspI IX
ATGACAAAGGACGGCGAACG
stsOPU19-4 AB030370 CGCTGAAATCAGGCTCAGG 470/418 size IX
AAAGAGGCAGAGAGGATCTC
stsOPV10-1 AB030371 GGTGTGATACGTCTTATAGG 493 RFLP after cutting withMspI IV
GGAACAATCAGGGCTGAGTG
stsOPV10-2 AB030372 GAAGGAAACAGCCTCATCAC 454 RFLP after cutting withAluI VIII
GTTCCAGTTTCCTACAGCTG
stsOPX06-1 AB030373 GAGACAATCCTTTCCCATTC 612 RFLP after cutting withAluI VIII
GCTCCAGATCCGCAAAGTGC
stsOPX06-2 AB030374 TGAAGGATGGCAGGCGTGTC 669 RFLP after cutting withBamHI unlinked
AB030375 GAGGCGTTCATCACTCCCAG
stsOPZ20-3 AB030376 GAATACGTGTGGAGTCAACC 388 RFLP after cutting withSspI VIII
AB030377 GAAGCATCCTTAGGAATGGG
  • Primer pairs shown in italics were used for sequencing but not for segregation analysis.

  • These markers were used only for high resolution mapping around the Da gene.

This Article

  1. Genome Res. 9: 1277-1287

Preprint Server