Large-Scale Clustering of cDNA-Fingerprinting Data

Table 2.

Distribution of Control Gene Clusters

NR. Gene ID Copies Subset (%) Library (%)
 1 Ef1_α 669 32.82 0.876
 2 Cytochrom_cox_I 274 13.55 0.362
 3 clone_190B1 254 12.52 0.334
 4 tubulin_β 207 10.20 0.272
 5 40SRibo_protS6 183 9.02 0.241
 6 40SRibo_protS4 100 4.93 0.132
 7 60SRibo_protL4 85 4.24 0.113
 8 GAPDH 82 4.04 0.108
 9 Ef1_β 67 3.30 0.088
10 human_calmodulin 32 1.58 0.042
11 heat_shock_cogKD71 28 1.38 0.037
12 heat_shock_cogKD90 26 1.28 0.034
13 human_TNF_receptor 12 0.59 0.016
14 clone_244D14 8 0.44 0.012
15 clone_241F17 2 0.10 0.003
  Total 2029 100 2.67
  • The entire human cNDA clone set contains 76,032 clones. The subset of the control gene cDNA clones contains 2,029 clones. Most of the control genes are house-keeping genes that have a moderate to high copy rate although three of the genes have a copy rate <15. The copies of the subset sum to a proportion of 2.67% of the entire library.

This Article

  1. Genome Res. 9: 1093-1105

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