Table 1.
Potential α2/Mcm1–Binding sites in the Yeast Genome
| ORF | Gene | bp | Sequence (TGTANWWWWCCNNNNNNGGWWWWNTACA) |
| mis = 0 | |||
| YDR461W | MFA1 | 204 | TGTAA TTACCCAAAAAGGAAATTTACA |
| YFL026W | STE2 | 201 | TGTAAATTTCCTAATTGGGTAA GTACA |
| YGL032C | AGA2 | 271 | TGTAA TTCCGAATACGGTAA TTACA |
| YIL015W | BAR1 | 237 | TGTAA TTACCGTAAAAGGAAA TTACA |
| YKL209C | STE6 | 184 | TGTAA TTACCTAATAGGGAAATTTACA |
| YNL145W | MFA2 | 223 | TGTAT TTACCTATTCGGGAAATTTACA |
| mis = 1 | |||
| DPS1 | TGTAA TTACTGTATTGGGAAATTTACA | ||
| YJL170C | ASG7 | 205 | TGTAAATTTCCCGATGCGGTAA TTACG |
| YJL169W | 166 | ||
| YKL188C | PXA2 | 259 | TGTAA TTAACGCCGAAGGAAT ATACA |
| YMR219W | ESC1 | 29 | TGTAA ATTCACCAAGGGGTTAAGTACA |
| YMR218C | 191 | ||
| mis = 2 | |||
| DPS2 | TGTAA TTACTTAAATAGGAAGTTTACA | ||
| YBL108W | 533 | TGTAG ATACCGTCCTTGGATA GAGCA | |
| YEL066W | HPA3 | 103 | CGTATATTTCCCAATCCGGTTA TTAAA |
| YFR007W | 55 | TGAAG TAACCTTGTTAGGTTAATTTCA | |
| YGL075C | MMC1 | 344 | TGTCATATACCCGTGAAGGCAT TTACA |
| YGL187C | COX4 | 324 | TGTATTTTTCAATAAGAGGATTATAACA |
| YJL062W | LAS21 | 162 | TATAGATATGCTTATACGGATATATACA |
| YJL063C | MRPL8 | 620 | |
| YJR137C | ECM17 | 611 | TGTACAATACCATCAATGGCTT CTAAA |
| YJR138W | 645 | ||
| YLR432W | 405 | TGTTCATTTCTAACTCTGGTTAATTACA | |
| YLR431C | 422 | ||
| YNL053W | MSG5 | 249 | TGTAC TTTCCAAAAAAGGAAA ATGTA |
| YNL298W | CLA4 | 349 | GGTAT TTTCCCTTTCCGGAAATATAGA |
| tS(AGA)J | tS(AGA)J | 469 | TGTTTAAATTCTTCTGGGGTAT ATACA |
| YAR020C | PAU7 | 3′ | TGTAG ATACCGTCTACGGATA GAGCA |
| YPR009W | 3′ | TGTAA TTTCCTCCTATGTAAA ATATA | |
| YBR259W | 3′ | TGTAG TAAATTATTATGGAATAGTACA | |
| YIR034C | LYS1 | int | TGTAT ATACTTTAAATGTAAA CTACA |
| YIR019C | MUC1 | int | TGTAA TTTCACCACCTGGTTTTGTACT |
| YIL131C | FKH1 | int | TGTAAATATCCGCTAATGAAATACTACC |
| YJR091C | JSN1 | int | TGGAGATT CCTGTGTTGGAATAGTATA |
| YAL029C | MYO4 | int | TCTAAAATACCAATAAAGGAAA AGACA |
| YGRWTy3-1 | Ty3 | int | TGTACAATTCCTGAAAAAGTTT GTATA |
| YMR146C | TIF34 | int | AGTAG TTACCGCATGGGGAAA ATTCA |
| YML043C | RRN11 | int | TGTAC AATGCAAAAGTGGAAT TTCCA |
| YIL031W | SMT4 | int | TGTAT TTTCAACAATCGGTGATCTACA |
| YNL250W | RAD50 | int | TGAAATTTTCCAAGCGATGAAATTTACA |
| YGL083W | SCY1 | int | TGTTCATAACCGCGCAAGCTTT GTACA |
| YNL192W | CHS1 | int | TGTAT ATTCCTTTTGTCATTT TT ACA |
| YNL191W | int | TGTAG AAACTTCACCAGGAGA ATACA | |
| YNL041C | int | TGAAT TATCCCTCAGGGCTAA GTACA | |
| YDL074C | int | TGTAGTTTTTCACACTTGGATT CTAGA | |
| YDR541C | int | TGTAA AAACCACACTGGGATC GTCCA | |
| YGL186C | int | TGTATTTATCACTTGATGAAAT GTACA | |
| YLR084C | RAX2 | int | GGTAATATTCCATTCTTGGTTT CTATA |
| YNL047C | int | AGTAC ATTCCACTAATGGTAT TGACA | |
| YNL078W | int | TGGGT TTACCACTTCAGGTTATATACA | |
| YDR206W | EBS1 | int | TGTACTTTTGCCGAAAAGGATT ATCCA |
| YIR010W | int | AGGAT ATTCCTGAAGAGGATTTTTACA | |
| YER037W | int | TGGAT TATCCGTGAAAGGTTTAATAAA | |
| YPL164C | int | TGTAG TTTTCGAAATGGGATAAATCCA | |
| YJL223C | PAU1 | int | TGTAG ATACCGTCCTTGGATA GAGCA |
| YEL049W | PAU2 | int | TGCTC TATCCAAGGACGGTAT CTACA |
| YGL261C | int | TGTAG ATACCGTCCTTGGATA GAGCA | |
| YGR294W | MGA1 | int | TGCTC TATCCAAGGACGGTAT CTACA |
| YIL176C | int | TGTAG ATACCGTCCTTGGATA GAGCA | |
| YAL068C | int | TGTAG ATACCGTCCTTGGATA GAGCA | |
| YBR301W | int | TGCTC TATCCAAGGTCGGTAT CTACA | |
| YHL046C | int | TGTAG ATACCGTCCTTGGATA GAGCA | |
| YKL224C | int | TGTAG ATACCGTCCTTGGATA GAGCA | |
| YDR542W | int | TGCTC TATCCAAGGTCGGTAT CTACA |
-
↵Blank entries indicate that a gene name has not been assigned to the ORF.
-
↵Mismatches with the consensus sequence are underlined. Blank entries indicate a site that is within the promoter region of two divergently transcribed genes. The site is shown on the line above.
-
↵The DPS1 and DPS2 sites are α2–Mcm1 sites located on the left arm of Chromosome III and are involved in mating-type switching but do not appear to regulate a specific ORF (Szeto et al. 1997).
