Table 3.
Two Clusters of Correlated Contig Sequences a andb, with Highly Correlated (r > 0.94) Expression Profiles
| Contig | Putative identity | Library EST counts | |||||||||
| 1073 | 535 | 307 | 499 | 961 | 75 | 1275 | 193 | 101 | 1009 | ||
| (a) | |||||||||||
| 1 | PRO2_ORYSA 13-kD Prolamin | 293 | 15 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 4 | GLU5_ORYSA glutelin | 183 | 9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 5 | GLU2_ORYSA glutelin type II | 145 | 28 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 7 | PRO1_ORYSA 10-kD prolamin | 145 | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 12 | — | 74 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 15 | — | 63 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 34 | PRO7_ORYSA prolamin | 29 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 35 | GLU3_ORYSA glutelin type-A III | 27 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 41 | GLGB_ORYSA 1,4-α-glucan branching enzyme | 26 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 53 | GLGB_MAIZE 1,4-α-glucan branching enzyme IIB | 21 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 83 | — | 11 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| 125 | PODK_MAIZE pyruvate phosphate dikinase | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 148 | PHSL_VICFA α-1,4 glucan phosphorylase | 10 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| 171 | ASPR_HORVU phytepsin | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 209 | UGST_ORYSA granule-bound starch synthase | 8 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 304 | SUS2_HORVU sucrose synthase 2 | 6 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 366 | — | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 367 | — | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 378 | — | 5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| (b) | |||||||||||
| 3 | RA05_ORYSA seed allergenic protein RA5 | 59 | 170 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 20 | — | 9 | 57 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 52 | RA17_ORYSA seed allergenic protein RA17 | 5 | 21 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 95 | IAA1_HORVU α-amylase inhibitor BMAI-1 | 2 | 16 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 114 | P93615 ABA-induced plasma membrane protein | 2 | 14 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 282 | CDP1_ORYSA calcium-dependent protein kinase | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 308 | P322_SOLTU probable protease inhibitor P322 | 1 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 481 | OLE1_ORYSA oleosin 16 kD | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 488 | — | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
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Contigs are listed with a putative identification, if available, corresponding to the best match in the SWISS-PROT/TrEMBL databases (score > 100; default scoring matrix). The expression profile for each contig is shown for the 10 libraries used (identified by dbEST library identifiers), arranged in the same order as in the library dendrogram (see Fig. 2).
