Large-Scale Statistical Analyses of Rice ESTs Reveal Correlated Patterns of Gene Expression

Table 1.

Breakdown of Rice cDNA Libraries Represented in dbEST

dbEST library identifier Library description Number of ESTs
1073 immature seed (5 days after pollination) 5094
307 green shoot (8 days old) 3790
961 callus 3542
75 callus 3229
193 etiolated shoot (8 days old) 3148
499 panicle (at flowering stage) 2025
101 seedling root 1884
535 panicle (at ripening stage) 1478
1275 callus (H. Uchimiya) 1431
1009 panicle (shorter than 3 cm) 890
967 panicle (longer than 10 cm) 365
1010 immature leaf including apical meristem 358
322 FDRSC 310
621 etiolated leaf tissue 132
966 panicle (between 3 and 10 cm) 74
968 etiolated shoot 43
1404 late flower (panicle size 1–2 cm) 42
1396 etiolated leaf 32
1281 suspension culture 29
466 FDRRC 13
1137 seed (A. Suzuki) 6
969 leaf (photoperiod insensitive) 2
1395 early flower (panicle size <1 cm) 2
1321 early embryogenesis 2
1243 2
1176 salt stressed 2
1266 etiolated shoot (Y. Jiang) 1
  • Data as of October 1998. For each library, the dbEST identifier is shown with a short description if available (taken from dbEST). Only the 10 cDNA libraries contributing significant numbers of ESTs (libraries 1073 to 1009) were further used in this study.

  • H. Uchimiya, University of Tokyo, Japan.

  • A. Suzuki, National Institute of Agrobiological Resources, Tsukuba, Japan.

  • Y. Jiang, Fudan University, Shanghai, China.

This Article

  1. Genome Res. 9: 950-959

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