Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays

Table 4.

rpoB Genotyping of Nontuberculosis Isolates with M. tuberculosisArray

Species Correct calls (bases) (%) Total no. polymorphic positions No. of polymorphic positions identified (%)
M. avium 467 (72) 56 38 (68)
M. chelonae 533 (82) 85 29 (34)
M. fortuitum 404 (62) 86 62 (72)
M. gordonae 449 (69) 71 44 (62)
M. intracellulare 479 (73) 58 50 (86)
M. kansasii 446 (68) 67 51 (76)
M. scrofulaceum 443 (68) 62 47 (75)
M. smegmatis 353 (54) 94 51 (54)
M. xenopi 432 (66) 72 51 (71)
  • Correct calls of nucleotides based on 653 total bases analyzed.

  • Total number of polymorphismic positions detected using dideoxynucleotide sequences.

This Article

  1. Genome Res. 8: 435-448

Preprint Server