GAIA: Framework Annotation of Genomic Sequence

Table 2.

Summary of CARTA Processing for ∼2 Mb of Human Test Sequence

Value IRE interprEST KnSA GRAIL STS Total
No. of features 1462 662 124 1196 75 3538
% CPU time 37.4 20.3 33.8 0.9 7.6 100
  • The number of features generated by each sensor is shown, as is the percent consumed by each sensor of the total CPU time expended on annotation. The absolute CPU time required by the computing resources used for this test was 19 hr, 7 min, 22 sec. Because of dependencies between sensors, the minimum elapsed time necessary to annotate the region was 13 hr, 37 min, 24 sec.

This Article

  1. Genome Res. 8: 234-250

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