Computational Advances in Maximum Likelihood Methods for Molecular Phylogeny

Table 1.

Likelihood Computation for Fig. 1a

Step Node Action
 1 5 L 5(i) = T 5→1 (i, s 1)
 2 5 R 5(i) = R 5→2 (i, s 2)
 3 5 D 5(i) = L 5(i) R 5(i)
 4 6 L 6(i) = T 6→3(i, s 3)
 5 6 R 6(i) = T 6→4 (i, s 4)
 6 6 D 6(i) = L 6(i) R 6(i)
 7 7 L 7(i) = ∑j T 7→5(i,j)D 5(j)
 8 7 R 7(i) = ∑j T 7→6(i,j)D 6(j)
 9 7 D 7(i) = L 7(i)R 7(i)
10 7 P = ∑i πi D 7(i)

This Article

  1. Genome Res. 8: 222-233

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