Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment

Table 2.

The Total Number of Jointly (phred and ABI) Aligned Bases in Each Data Set by Read Position and Chemistry

Base position Cosmid sets 1 and 2 Cosmid set 3
dye primer dye terminator dye primer dye terminator
0–99 1257891 25713 1295476 110854
100–199 1633260 39811 2061225 150636
200–299 1616786 37901 2058974 149023
300–399 1509497 31060 2033304 147021
400–499 1002456 15480 1981676 143205
500–599 347668 4403 1910734 139170
600–699 93586 643 1773872 132953
700–799 33624 18 1486434 120471
800–899 9279 967925 93722
900–999 225 387513 59183
1000–1099 67934 15673
1100–1199 2448 957
1200–1299 56 87

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