Predicting Gene Regulatory Elements in Silico on a Genomic Scale

Table 3.

Summary Information about Pattern Scores in the Clusters and Random Sets

Cluster name No. of genes Score range for the 10 best patterns Score for the best pattern in the resp. random set
Cr (3,4)(000010) 77 3.80–2.80 1.70
Cr (5,2,4)(000020) 55 3.99–2.96 1.94
C(5,2,4)(0000021) 41 3.77–2.95 2.12
C(5,2,4)(0000022) 38 7.15–4.11 2.09
Cr (3,5)(000010) 38 3.50–3.17 2.73
C(5,2,4)(0000012) 37 2.87–2.52 2.42
Cr (5,3,5)(000020) 37 3.60–3.08 2.12
Cr (5,2,3)(00002-1) 25 4.00–3.89 3.86
Cr (3,3)(000001) 26 3.55–3.29 4.33
C(5,2,6)(00000-1-2) 27 3.69–3.21 3.13
C(5,3,6)(00000-1-2) 25 4.00–3.89 3.86
  • For explanation of the cluster names, see Methods. The first eight clusters consist of genes the expression level of which increase at time point 6; the last two of genes the expression level of which decrease at time point 6. The statistics include all patterns (trivial variants were not removed).

This Article

  1. Genome Res. 8: 1202-1215

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