Table 4.
Consensus Sequence for the 7-bp Spacer Sequences between CeRep25B Elements
| Base | Position in spacer | |||
| 1/7 | 2/6 | 3/5 | 4 | |
| A | 34.6 | 86.2 | 74.9 | 12.8 |
| C | 57.8 | 1.8 | 7.8 | 36.7 |
| T | 5.8 | 11.6 | 15.1 | 12.8 |
| G | 0.8 | 0.2 | 1.0 | 36.7 |
| Consensus (C/g)AA(c/g)TT(G/c) | ||||
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Numbers refer to percentage of bases at each position. The 7-bp spacer is represented here as half a palindrome, such that bases 1 and 7, which are normally complementary, are given the same weight. This consensus does not include spacers other than 7 bp.
