Transcripts Identified by Sequencing the USH1C Critical Region
| Contig (kb) | PAC | Known genes | STSs | ESTc (%ID/length) (rep. clone) | GRAIL exons | CpG islands |
| 761 (7) | 169p3 | |||||
| 765 (9) | 169p3 | RP-S4/S25 pseudogenes | SHGC3156 | 5 | 2 | |
| 766 (13) | 239b22 | SUR1 | 5 | |||
| 767 (13) | 169p3 | 2 | ||||
| 770 (25) | 169p3 | D11S1228 | ||||
| 771 (18) | 169p3/306b4 | NEFA | 6 (80/185)(R63988) | 1 | ||
| 773 (23) | 169p3/306b4 | NEFA | AFMb340wf5 | 5 (99/618)(R02788) | 3 | 1 |
| 774 (38) | 169p3/306b4 | NEFA | 4 (96/63)(AA091720) | 10 | 1 | |
| 775 (50) | 239b2 | SUR1 | 1 (97/480)(H09680) | 18 | 2 | |
| 776 (85) | 306b4/239b22 | SUR1 , BIR | 2 (98/460)(H73741) | 29 | 4 | |
| 3 (99/534)(W93954) | ||||||
| Total sequenced 281 | ||||||
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↵Number of kilobase pairs in sequence contig. Genomic sequence data are available using GenBANK accession nos. AC000406 andAC000407.
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↵Sequenced-tagged sites.
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↵Expressed sequenced-tagged site cluster. (%ID/length) percent identity/length of homologous region, GenBank accession no. for representative clone.
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↵Number of GRAIL-predicted exons of “excellent” quality.
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↵CpG islands as defined by Gardiner-Garden and Frommer (1987).
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↵Pseudogenes for ribosomal proteins S4 and S25.
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↵(SUR1) Sulfonylurea receptor 1 (GenBank accession nos. L78207–L78243).
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↵(NEFA) DNA binding/ EF-hand/acidic-amino acid rich protein (GenBank accession no. X76732).
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↵(BIR) β-Cell inward rectifier potassium channel gene (GenBank accession no. D50582).
