Table 1.
Summary information on the RPRP genomes and their annotations
| Stock accessiona | RPRP gene model prefix | Genetic stock varname | Country origin | K15 subpops | K15 common | K5 groups | Gene count |
|---|---|---|---|---|---|---|---|
| IRGC 117425 | OsARC_ | ARC 10497::IRGC 12485-1 | India | cB | cBasmati | aro | 36,442 |
| IRGC 117264 | OsAzu_ | Azucena | Philippines | GJ-trop1 | tropA | Tropjap | 36,626 |
| IRGC 132278 | OsCMeo_ | CHAO MEO::IRGC 80273-1 | Lao PDR | GJ-subtrp | subtrop | Tropjap | 36,999 |
| IRGC 132424 | OsGoSa_ | GOBOL SAIL (BALAM)::IRGC 26624-2 | Bangladesh | XI-2A | ind2A | indica | 36,237 |
| IRGC 117268 | OsIR64_ | IR 64 | Philippines | XI-1B1 | ind1B1 | indica | 36,102 |
| IRGC 128077 | OsKeNa_ | KETAN NANGKA::IRGC 19961-2 | Indonesia | GJ-trop2 | tropB | Tropjap | 36,612 |
| IRGC 127518 | OsKYG_ | KHAO YAI GUANG::IRGC 65972-1 | Thailand | XI-3B1 | ind3B1 | indica | 36,476 |
| IRGC 125619 | OsLaMu_ | LARHA MUGAD::IRGC 52339-1 | India | XI-2B | ind2B | indica | 36,316 |
| IRGC 127564 | OsLima_ | LIMA::IRGC 81487-1 | Indonesia | XI-3A | ind3A | indica | 37,044 |
| IRGC 125827 | OsLiXu_ | LIU XU::IRGC 109232-1 | China | XI-3B2 | ind3B2 | indica | 36,378 |
| OsMH63_ | Minghui 63 | China | XI-adm | ind-admx | indica | 36,147 | |
| IRGC 117534 | OsN22_ | N22::IRGC 19379-1 | India | cA1 | cAus1 (Assam) | aus | 36,319 |
| IRGC 127652 | OsNaBo_ | NATEL BORO::IRGC 34749-1 | Bangladesh | CA2 | cAus2 (Bengal) | aus | 36,196 |
| IRGC 117274 | Os (RAP-DB); Loc_Os (MSU); Gramene annotations OsNip_ | Nipponbare (IRGSP1.0) | Japan | GJ-temp | temp | Tempjap | 62,225b |
| IRGC 127742 | OsPr106_ | PR 106::IRGC 53418-1 | India | XI-1B2 | ind1B2 | indica | 36,436 |
| IRGC 117280 | OsZS97_ | Zhen Shan 97 | China | XI-1A | ind1A | indica | 35,686 |
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aStock accession or closest OryzaSNP_accession.
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bBreakdown by source prior to merging: RAP-DB = 35,694, MSU = 55,801 (including possible transposable elements), OsNip = 37,007.
