Table 2.
Error correction by using the Nanopore and PacBio consensuses
| Chromosome | Starting nucleotide | Ending nucleotide | Total length of tandem repeats | Nanopore corrections | HiFi corrections |
|---|---|---|---|---|---|
| I | 4,715,580 | 4,817,023 | 101,443 | 2627 (2.59%) | 24 (0.024%) |
| II | 14,800,218 | 14,842,635 | 42,417 | 1093 (2.58%) | 6 (0.014%) |
| III | 7,856,863 | 8,031,900 | 175,037 | 5439 (3.11%) | 25 (0.014%) |
| X | 4,508,408 | 4,592,148 | 83,740 | 3007 (3.59%) | NA |
| X | 5,581,121 | 5,673,280 | 92,159 | 1633 (1.77%) | NA |
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Nucleotide coordinates of these five gap regions are given for the final CGC1 genome assembly Corrections for each read type (Nanopore or HiFi) include the total number of corrected bases, insertions, and deletions, and their ratio to the total length (in parentheses). (NA) No HiFi corrections are made in CHROMOSOME_X.
