Table 1.
Statistics for indexing and aligning to GRCh38 Chr 6
| Aligner | Moni-align | vg map | vg giraffe |
|---|---|---|---|
| Total Chr 6 reads | 23,996,850 ± 6941 | 23,996,850 ± 6941 | 23,996,850 ± 6941 |
| Chr 6 aligned reads | 21,735,403 ± 5668 | 23,830,814 ± 6628 | 23,996,324 ± 6927 |
| MHC aligned reads | 579,417 ± 1032 | 639,421 ± 774 | 644,479 ± 761 |
| Index CPU time (min) | 56 | 129 | 4 |
| Index peak memory (GB) | 3.93 | 14.31 | 4.69 |
| Align CPU time (min) | 1102 ± 281 | 795 ± 73 | 81 ± 17 |
| Align peak memory (GB) | 2.55 ± 0.01 | 2.22 ± 0.06 | 4.02 ± 0.01 |
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Average and standard deviation for each category, calculated from the alignments of the five HG005 read subsamples produced by the three aligners.
