Table 2.
Hi-C contact statistics confirming phasing correctness of the Pst104E genome assembly
| Types of Hi-C contacts (MAPQ ≥ 20) | Counts |
|---|---|
| Total Hi-C links | 1,126,566 |
| Within-haplotype links | 1,117,107 (99.2%) |
| cis-chromosome | |
| Haplotype A | 479,583 (42.6%) |
| Haplotype B | 467,937 (41.5%) |
| trans-chromosome | |
| Haplotype A | 85,667 (7.6%) |
| Haplotype B | 83,920 (7.5%) |
| Cross-haplotype links | 9459 (0.8%) |
