Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements

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Figure 7.
Figure 7.

Transposable elements (TEs) in the Lake Malawi cichlid pangenome. (A) Genome-wide and SV TE composition of the A. calliptera fAstCal1.2 assembly. (B) TE insertions in the first intron of mitfa, highlighting the presence of two complex bubbles. (C) Number of putative polymorphic TE insertion events by subclass across 90,451 bubbles.

This Article

  1. Published in Advance April 10, 2025, doi: 10.1101/gr.279674.124 Genome Res. 35: 1094-1107

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