Quality assessment of long read data in multisample lrRNA-seq experiments using SQANTI-reads

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Figure 4.
Figure 4.

Variation in donors/acceptors. Metrics are only calculated for annotated donor/acceptors with a minimum threshold of reads (10 by default). (A) Metrics for the classification of donor/acceptor variation. When all reads align to the annotated donor/acceptor this is classified as a reference match (Ref Match). When all reads align to the same donor/acceptor location, but this is not the annotated position this is classified as CV = 0. When reads align in multiple positions in proximity to an annotated donor/acceptor this is classified as CV > 0. (B) Classification of the number (left) and percentage (right) of detected acceptors faceted by technology. (C) Classification of the number (left) and percentage (right) of detected donors faceted by technology.

This Article

  1. Genome Res. 35: 987-998

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