Table 3.
The number of cells, genes, and transcripts and their structural categories after filtering
| Normal | ccRCC2 | ccRCC3 | ccRCC4 | ccRCC5 | |
|---|---|---|---|---|---|
| Cells | 390 | 334 | 272 | 1016 | 366 |
| Unique genes | 13,630 | 12,532 | 12,460 | 13,323 | 13,586 |
| Unique transcripts | 101,942 | 97,294 | 56,596 | 83,342 | 91,734 |
| FSM (%) | 52,327 (51.3%) | 50,011 (51.4%) | 35,585 (62.9%) | 45,697 (54.8%) | 47,774 (52.1%) |
| ISM (%) | 9490 (9.31%) | 8689 (8.9%) | 6154 (10.9%) | 7649 (9.2%) | 7930 (8.64%) |
| NIC (%) | 18,084 (17.7%) | 17,168 (17.6%) | 7094 (12.5%) | 14,123 (16.9%) | 17,406 (19.0%) |
| NNC (%) | 21,632 (21.2%) | 21,020 (21.6%) | 7591 (13.4%) | 15,444 (18.5%) | 18,092 (19.7%) |
| Other (%) | 409 (0.4%) | 406 (0.417) | 172 (0.3%) | 429 (0.5%) | 532 (0.6%) |
-
(FSM) Full splice match, (ISM) incomplete splice match, (NIC) novel in catalog, (NNC) novel not in catalog. Other: Genic, antisense, intergenic, fusion, more Junctions.
