Figure 5.
Leading mQTL variants among the pangenome SVs. (A) Volcano plots of mQTLs where the leading variant is an SV. (B) Number of methylation bins in mQTL with an SV, stratified by reference or nonreference SV allele, and positive or negative effect on methylation. (C) Allele frequency distribution of mQTL-SVs, stratified by leading versus nonleading variant, and reference and nonreference SV alleles. (D) The distribution of distances between SV-mQTLs and their methylation bins, stratified as in C.
