Figure 3.
Annotation of sequences that contribute SV-CpGs. (A) Number of SV-CpGs and SV-5mCpGs contributed by sequences without repeats (None) and sequences with repeats. (B) Proportion of methylated CpGs by repeat category, contrasting reference CpGs and SV-CpGs. (C) Frequency distributions of SV-5mCpGs, stratified by repeat category. (D) The observed methylation rates of CpGs, as calculated in Figure 1D, are stratified by repeat category. Intervals denote the 25%, 50% (median, dot), and the 75% quantiles. The rhombi denote the means of the distributions.
