Fourteen newly HiFi-assembled taurine haplotypes from Evolèner (EVO), Simmental (SIM), Rätisches Grauvieh (RGV), Original Braunvieh (OBV), or Brown Swiss (BSW) ancestry that were created with trio-binning (Trio) or a dual-assembly (Dual) approach
| Sample/acronym | HiFi Coverage (Gb) | Haplotype | Size | Contigs | N50 | QV | Gene completeness |
|---|---|---|---|---|---|---|---|
| GIR × SIM/SIM_2 | 91.4 | Trio | 3.16 | 886 | 52.5 | 53.1 | 99.6 |
| RGV × SIM/SIM_3 | 140.1 | Trio | 3.21 | 682 | 89.9 | 58.8 | 99.5 |
| RGV × SIM/RGVa | 3.09 | 816 | 91.9 | 58.3 | 97.2 | ||
| DWZ × EVO/EVO | 139.1 | Trio | 3.19 | 527 | 92.1 | 57.5 | 99.7 |
| Brown Swiss/BSW_3a | 111.8 | Trio | 3.11 | 1031 | 80.6 | 46.7 | 98.4 |
| Brown Swiss/BSW_4 | 3.11 | 857 | 71.2 | 47.1 | 98.3 | ||
| Original Braunvieh/OBV_3 | 135.8 | Dualb | 2.95 | 2250 | 72.6 | 44.5 | 97.0 |
| Original Braunvieh/OBV_4 | 2.99 | 1550 | 71.5 | 44.9 | 97.9 | ||
| Braunvieh/BV_1 | 122.9 | Dualb | 2.95 | 2336 | 74.9 | 47.4 | 98.2 |
| Braunvieh/BV_2 | 2.99 | 1755 | 72.4 | 47.6 | 96.6 | ||
| Braunvieh/BV_3 | 145.0 | Dualb | 3.02 | 1701 | 83.2 | 43.1 | 95.1 |
| Braunvieh/BV_4 | 2.85 | 2099 | 82.6 | 44.2 | 96.6 | ||
| Braunvieh/BV_5 | 131.0 | Dualb | 3.05 | 1373 | 85.0 | 38.2 | 98.6 |
| Braunvieh/BV_6 | 2.91 | 1681 | 74.6 | 39.1 | 96.5 |
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Braunvieh (BV) indicates samples with both Brown Swiss and Original Braunvieh ancestry. HiFi coverage is given in gigabases per animal, and so is shared when both haplotypes are given. N50 is calculated with respect to the ARS-UCD1.2 size. The QV score is estimated with Merqury from short reads. Gene completeness is calculated by compleasm on the cetartiodactyl ODB10 gene set.
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aIndicates male trio-binned haplotypes including only a Y Chromosome (no X Chromosome), which can result in small genome size, lower N50, reduced gene completeness, etc.
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bIndicates male F1s that were assembled without parental information, and so X and Y Chromosomes may be split between the dual haplotypes.
