Table 3.
Genes with functions related to male gonadal development and pigmentation in the MSY region
| Ymac start | Ymac end | Ygua start | Ygua end | Gene annotation | Comments on function and expression |
|---|---|---|---|---|---|
| 23.793.174 | 23.796.136 | 23.577.725 | 23.580.685 | Sperm-associated antigen 8-like | Cell cycle regulation during spermiogenesis |
| 24.828.972 | 24.829.886 | 24.651.601 | 24.652.515 | Growth arrest and DNA damage-inducible protein GADD45 gamma | Regulates SRY; sex reversal candidate |
| 24.833.872 | 24.834.948 | 24.656.498 | 24.657.585 | Growth arrest and DNA damage-inducible protein GADD45 gamma | Growth arrest at puberty; male-specific trait |
| 24.940.636 | 24.943.646 | 24.771.398 | 24.774.385 | Prostate androgen-regulated mucin-like protein 1 (PARM) | Target of androgen |
| 25.311.394 | 25.334.880 | 25.141.772 | 25.165.256 | Cilia- and flagella-associated protein 44 | Sperm motility |
| 25.856.670 | 25.863.321 | 25.773.319 | 25.780.388 | Cyclin-I isoform X1 [Poecilia reticulata] | Last genetic marker 229; male-specific SNPs |
| 25.979.809 | 25.982.063 | 25.987.747 | 25.993.537 | Spindlin-1-like [Xiphophorus maculatus] | Ssty domain; spermiogenesis |
| 26.568.289 | 26.572.876 | 26.574.475 | 26.579.107 | Flagellar WD repeat-containing protein Pf20-like | Sperm motility |
| 27.005.425 | 27.007.897 | 27.199.913 | 27.202.448 | Sepiapterin reductase | Red and yellow pigment |
| 27.061.485 | 27.081.388 | 27.260.493 | 27.281.378 | Outer dense fiber protein 2 | Sperm motility |
| 27.302.394 | 27.309.962 | 27.453.812 | 27.462.891 | LMBR1 domain-containing protein 2 | Male bias expression in gonad |
| 27.329.422 | 27.332.468 | 27.484.292 | 27.487.357 | Cilia- and flagella-associated protein 53 [P. reticulata] | Sperm mobility; male bias |
| 28.069.253 | 28.075.419 | 28.176.114 | 28.182.692 | Hydroxysteroid dehydrogenase-like protein 2 isoform X1 | Steroid metabolism |
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Positions (in base pairs) are listed for Guanapo and Maculatus haplotypes.
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Comments on function and expression are based on an analysis of gene annotations. For expression patterns, see Supplemental Table S4.
