Interactive visualization and interpretation of pangenome graphs by linear reference–based coordinate projection and annotation integration

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Figure 2.
Figure 2.

VRPG's visualization of different types of genomic variants. For different types of genomic variants such as divergent region (A), insertion (B), deletion (C), inversion (D), duplication (E), and duplication with divergent region (F), their VRPG-based graph representations are depicted with a path highlighting feature enabled for the reference and query genome, respectively. Information of the highlighted path regarding nodes’ traversing order and orientation is further reported (in GAF-specified style) in VRPG's path information panel.

This Article

  1. Published in Advance January 13, 2025, doi: 10.1101/gr.279461.124 Genome Res. 35: 296-310

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