Accurate detection of tandem repeats from error-prone sequences with EquiRep

Table 3.

Performance on RCA data: number of predicted repeat lengths within error ranges of the true length and number of no repeats found (out of 101 instances)

Error range EquiRep mTR TRF mreps TideHunter
0.95 to 1.05 (5%) 98 5 68 1 101
0.8 to 1.2 (20%) 100 5 68 1 101
0.5 to 1.5 (50%) 100 5 68 1 101
0.2 to 1.8 (80%) 101 9 69 1 101
#norepeat 0 18 30 7 0

This Article

  1. Genome Res. 35: 2714-2721

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