Accurate detection of tandem repeats from error-prone sequences with EquiRep

Table 1.

Averaged normalized rotation-aware edit distance on human satellite DNA data

Error rate (%) Pattern EquiRep mTR TRF mreps TideHunter
0 x 0.1260 0.9960 0.1274 0.9492 0.1305
0 axa 0.1255 0.1260 0.1274 0.9737 0.1305
1 x 0.1251 0.9960 0.1408 0.9492 0.1282
1 axa 0.1251 0.1260 0.1408 0.9492 0.1282
5 x 0.1282 0.9843 0.2267 0.9204 0.1489
5 axa 0.1269 0.1264 0.2267 0.9263 0.1489
10 x 0.1363 0.9960 0.9960 0.9370 1.0550
10 axa 0.1251 0.1498 0.9960 0.9664 1.0550

This Article

  1. Published in Advance August 21, 2025, doi: 10.1101/gr.280750.125 Genome Res. 35: 2714-2721

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