Estimating the size of long tandem repeat expansions from short reads with ScatTR

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Figure 5.
Figure 5.

Runtime evaluation of ScatTR in simulated and real WGS samples (A) Measured runtime (hours) for estimating TR copy number at a single locus across five real WGS samples. Reported times are the mean of five runs. (B) Measured runtime (hours) for estimating TR copy numbers across varying catalog sizes in five WGS samples, comparing ScatTR, state-of-the-art methods, and a closed-form solution. (C) Breakdown of ScatTR runtime by processing step for B.

This Article

  1. Published in Advance August 21, 2025, doi: 10.1101/gr.280563.125 Genome Res. 35: 2701-2713

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