Pangenome-based genome inference using integer programming

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

Figure 5.
Figure 5.

Assessment of PHI's performance with the increasing number of genomes in pangenome graph. The left figure shows the accuracy in terms of edit distance between the output sequences and ground-truth sequences. The middle and right figures show the runtime and memory usage, respectively.

This Article

  1. Published in Advance August 21, 2025, doi: 10.1101/gr.280567.125 Genome Res. 35: 2661-2670

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research