Pangenome-based genome inference using integer programming

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Figure 3.
Figure 3.

Accuracy of the haplotype sequences estimated by PHI, VG, and PanGenie. We used short-read data sets from MHC sequences of five haplotypes: (A) APD, (B) DBB, (C) MANN, (D) QBL, (E) SSTO. The x-axes indicate the coverage of short-read data. The y-axes indicate the edit distance between the estimate haplotype sequence and the ground-truth sequence on a logarithmic scale.

This Article

  1. Published in Advance August 21, 2025, doi: 10.1101/gr.280567.125 Genome Res. 35: 2661-2670

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