Table 2.
Analysis rate and memory use for the main classification pipelines within MARTi running on a MacBook Pro and Dell server
| Pipeline | Device | Jobs | Threads | Peak memory (MB) | Execution time (s) | Reads per min (RPM) |
|---|---|---|---|---|---|---|
| MARTi-BLAST-meta | MacBook | 8 | 1 | 65,526 | 47,457 | 126.43 |
| MARTi-Centrifuge-prok | MacBook | 2 | 8 | 41,958 | 224 | 26,785.71 |
| MARTi-Kraken2-pluspf8 | MacBook | 2 | 8 | 48,142 | 204 | 29,411.76 |
| MARTi-BLAST-meta | Dell Tower | 20 | 2 | 126,041 | 18,616 | 322.30 |
| MARTi-Centrifuge-meta | Dell Tower | 1 | 40 | 191,418 | 2778 | 2159.83 |
| MARTi-Kraken2-meta | Dell Tower | 1 | 40 | 156,038 | 1264 | 4746.84 |
| MARTi-Centrifuge-prok | Dell Tower | 40 | 1 | 191,269 | 328 | 18,292.68 |
| MARTi-Kraken2-pluspf8 | Dell Tower | 40 | 1 | 123,588 | 271 | 22,140.22 |
