Table 1.
Taxonomic classification pipelines applied to the simulated mock community
| Pipeline | Platform | Classification | Database |
|---|---|---|---|
| MARTi-BLAST-nt-0.0 | MARTi | MegaBLAST | NCBI Nucleotide (03-2023) |
| MARTi-BLAST-nt-0.1 | MARTi | MegaBLAST | NCBI Nucleotide (03-2023) |
| MARTi-BLAST-nt-1.0 | MARTi | MegaBLAST | NCBI Nucleotide (03-2023) |
| MARTi-BLAST-meta-0.0 | MARTi | MegaBLAST | Metagenomic (11-2023) |
| MARTi-BLAST-meta-0.1 | MARTi | MegaBLAST | Metagenomic (11-2023) |
| MARTi-BLAST-meta-1.0 | MARTi | MegaBLAST | Metagenomic (11-2023) |
| MARTi-Centrifuge-meta-0.0 | MARTi | Centrifuge | Metagenomic (11-2023) |
| MARTi-Centrifuge-meta-0.1 | MARTi | Centrifuge | Metagenomic (11-2023) |
| MARTi-Centrifuge-meta-1.0 | MARTi | Centrifuge | Metagenomic (11-2023) |
| EPI2ME-Centrifuge-meta-0.0 | EPI2ME Agent | Centrifuge | Metagenomic (06-2021) |
| MARTi-Kraken2-pluspf8-0.0 | MARTi | Kraken2 | PlusPF-8 (03-2023) |
| MARTi-Kraken2-pluspf8-0.1 | MARTi | Kraken2 | PlusPF-8 (03-2023) |
| MARTi-Kraken2-pluspf8-1.0 | MARTi | Kraken2 | PlusPF-8 (03-2023) |
| EPI2ME-Kraken2-pluspf8-0.0 | EPI2ME | Kraken2 | PlusPF-8 (03-2023) |
| MARTi-BLAST-pluspf8-0.0 | MARTi | MegaBLAST | PlusPF-8 (03-2023) |
| MARTi-BLAST-pluspf8-0.1 | MARTi | MegaBLAST | PlusPF-8 (03-2023) |
| MARTi-BLAST-pluspf8-1.0 | MARTi | MegaBLAST | PlusPF-8 (03-2023) |
