Tree-based differential testing using inferential uncertainty for RNA-seq

Table 2.

Time taken (in hh:mm:ss) by treeclimbR and mehenDi on the BrSimNorm and MouseMuscle data sets

Method BrSimNorm (hh:mm:ss) MouseMuscle (hh:mm:ss)
treeclimbR getCand 37:06:05 15:05:40
evalCand (α = 0.01) 00:00:51 00:00:28
evalCand (α = 0.05) 00:00:50 00:00:29
evalCand (α = 0.1) 00:00:50 00:00:29
mehenDi (cores = 1) α = 0.01 00:07:16 00:06:49
α = 0.05 00:08:49 00:12:14
α = 0.1 00:09:60 00:15:23
mehenDi (cores = 4) α = 0.01 00:01:58 00:02:22
α = 0.05 00:02:25 00:03:55
α = 0.1 00:02:46 00:04:44

This Article

  1. Genome Res. 35: 2326-2338

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