Tree-based differential testing using inferential uncertainty for RNA-seq

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Figure 6.
Figure 6.

Examining the transcript profile for the gene (A) DNAH9 and (B) EYA4 in the ChimpBrain data set. (i) Transcripts in a pileup style. (ii) Tree representing the transcripts covered by the gene, with the red node representing the transcripts covered by the mehenDi-selected node. (iii) Inferential replicates for the transcript with the lowest P-value among all the transcripts in the tree. (iv) Inferential replicates for the mehenDi-selected node.

This Article

  1. Published in Advance August 21, 2025, doi: 10.1101/gr.279981.124 Genome Res. 35: 2326-2338

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