Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries

Table 6.

Quick reference for definitions of metrics used frequently throughout this study

Metric	Formula	Threshold
Precision	$\text{[math]}$	Across quality filter levels
Recall	$\text{[math]}$	Across quality filter levels
cTPR	$\text{[math]}$	Across alt-allele coverage levels
cFDR	$\text{[math]}$	Across alt-allele coverage levels

Published in Advance August 15, 2024, doi: 10.1101/gr.277066.122 Genome Res. 2024. 34: 1196-1210