Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries

Table 5.

Breakdown of scRNA-seq scu-variants by predicted location/impact

EPSRC1 EPSRC2 EPSRC4 CTRL
3_prime_UTR_variant 135 106 333 450
missense_variant 33 31 66 106
synonymous_variant 10 9 26 47
5_prime_UTR_variant 3 5 24 40
stop_gained 3 0 3 5
Othera 6 6 19 34
Total 190 157 471 682

  • a“Other” represents all variants not in one of the existing categories.

This Article

  1. Published in Advance August 15, 2024, doi: 10.1101/gr.277066.122 Genome Res. 34: 1196-1210

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