Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries

Table 4.

scRNA-seq and scATAC-seq overlapping URP variants

scRNA-seq scATAC-seq Overlapping
Total coverage, MB 177.4 1260.0 128.0
URP/MRP variants, count 33,180 35,317 1012
MRP variant rate, /MB 8.1 ± 0.8
Predicted rare variants, using MRP variant rate 728.7 (0.021) 4926.5 (0.138)

This Article

  1. Published in Advance August 15, 2024, doi: 10.1101/gr.277066.122 Genome Res. 34: 1196-1210

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